<div dir="ltr">Hi Nikhil<div><br></div><div>Thank you. I loaded .xyz file and now able to see molecule.</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, 5 Oct 2019 at 20:01, Travis <<a href="mailto:polla...@gmail.com">polla...@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi,<div><br></div><div>I don't have any issues either. Vasantha, I'm not familiar with the way you're loading the XYZ file. The output from VMD suggests you're reading it from a plugin, try loading the XYZ first.</div><div><br></div><div><div style="background-color:rgb(250,250,250);border-color:rgb(187,187,187);border-style:solid;border-width:1px"><code><div><div>Info) Dynamically loaded 75 plugins in directory:</div><div>Info) C:/Program Files (x86)/University of Illinois/VMD/plugins/WIN32/molfile</div><div>Info) File loading in progress, please wait.</div><div>Info) Using plugin xyz for structure file C:\Users\koschey\Downloads\H2O-pos-1.xyz</div><div>Info) Using plugin xyz for coordinates from file C:\Users\koschey\Downloads\H2O-pos-1.xyz</div><div>Info) Determining bond structure from distance search ...</div><div>Info) Finished with coordinate file C:\Users\koschey\Downloads\H2O-pos-1.xyz.</div><div>Info) Analyzing structure ...</div><div>Info) Atoms: 3</div><div>Info) Bonds: 2</div><div>Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0</div><div>Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0</div><div>Info) Residues: 1</div><div>Info) Waters: 0</div><div>Info) Segments: 1</div><div>Info) Fragments: 1 Protein: 0 Nucleic: 0</div><div>vmd ></div></div></code></div></div><div><br></div><div>-T</div><div><br><br>On Saturday, October 5, 2019 at 10:19:57 AM UTC-4, Nikhil Maroli wrote:<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Problem is with your VMD, the xyz file is working fine</div><br><div class="gmail_quote"><div dir="ltr">On Sat, Oct 5, 2019 at 6:35 PM vasanth kumar <<a rel="nofollow">va...@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Travis<div><br></div><div>Thank you for reply.</div><div><br></div><div>When I opened .xyz file, No molecule is seen. Pl check attached file and attaching .xyz file also<br><div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr">On Sat, 5 Oct 2019 at 18:22, Travis <<a rel="nofollow">po...@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi,<br> <br> All dumped xyz files are in standard XMOL format and so are directly viewable in VMD. You need to load the <a href="http://foo-pos-1.xyz" rel="nofollow" target="_blank">foo-pos-1.xyz</a> file to view the trajectory, not your output/log file.<br> <br> -T<br> <br> -- <br> You received this message because you are subscribed to a topic in the Google Groups "cp2k" group.<br> To unsubscribe from this topic, visit <a href="https://groups.google.com/d/topic/cp2k/lWrirFt8pHc/unsubscribe" rel="nofollow" target="_blank">https://groups.google.com/d/topic/cp2k/lWrirFt8pHc/unsubscribe</a>.<br> To unsubscribe from this group and all its topics, send an email to <a rel="nofollow">c...@googlegroups.com</a>.<br> To view this discussion on the web visit <a href="https://groups.google.com/d/msgid/cp2k/22065f48-1c5f-49db-9647-041d63562dc3%40googlegroups.com" rel="nofollow" target="_blank">https://groups.google.com/d/msgid/cp2k/22065f48-1c5f-49db-9647-041d63562dc3%40googlegroups.com</a>.<br> </blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr"><div dir="ltr"><div>With Regards<br><br></div><div>Dr. V. Vasantha Kumar<br></div><div>Assoc. Prof. of Physics<br></div><div>Vignan Institute of Technology and Science<br></div><div>Hyderabad.<br></div><div>Mob:9959363113<br></div></div></div> <p></p> -- <br> You received this message because you are subscribed to the Google Groups "cp2k" group.<br> To unsubscribe from this group and stop receiving emails from it, send an email to <a rel="nofollow">c...@googlegroups.com</a>.<br> To view this discussion on the web visit <a href="https://groups.google.com/d/msgid/cp2k/CAJeL8MY-NTfkykaj3-5%3D88aJffXehQ_qt3cA7ZjTd7TemSHuYg%40mail.gmail.com?utm_medium=email&utm_source=footer" rel="nofollow" target="_blank">https://groups.google.com/d/msgid/cp2k/CAJeL8MY-NTfkykaj3-5%3D88aJffXehQ_qt3cA7ZjTd7TemSHuYg%40mail.gmail.com</a>.<br> </blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div>Regards,</div>Nikhil Maroli<div><br></div></div></div></div></div> </blockquote></div></div> <p></p> -- <br> You received this message because you are subscribed to the Google Groups "cp2k" group.<br> To unsubscribe from this group and stop receiving emails from it, send an email to <a href="mailto:cp...@googlegroups.com" target="_blank">cp...@googlegroups.com</a>.<br> To view this discussion on the web visit <a href="https://groups.google.com/d/msgid/cp2k/05c5237d-376c-4490-8a2c-535dc0ef8078%40googlegroups.com?utm_medium=email&utm_source=footer" target="_blank">https://groups.google.com/d/msgid/cp2k/05c5237d-376c-4490-8a2c-535dc0ef8078%40googlegroups.com</a>.<br> </blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div>With Regards<br><br></div><div>Dr. V. Vasantha Kumar<br></div><div>Assoc. Prof. of Physics<br></div><div>Vignan Institute of Technology and Science<br></div><div>Hyderabad.<br></div><div>Mob:9959363113<br></div></div></div>