<div dir="ltr">Hi Travis,<div><br></div><div>I just tried with your suggested script on my computer, but I got following errors</div><div><br></div><div><div>Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.</div><div><br></div><div>Backtrace for this error:</div><div><br></div><div>Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.</div><div><br></div><div>For your reference, I just installed cp2k on Ubuntu 18.04 by <span style="color: rgb(232, 62, 140); font-family: SFMono-Regular, Menlo, Monaco, Consolas, "Liberation Mono", "Courier New", monospace; font-size: 12.25px;">sudo apt-get install -y cp2k</span><font face="arial, sans-serif" style="" size="2" color="#000000"> and cp2k version is 5.1 with cp2k.popt. Can you shed some light on this problem, thanks.</font></div><div><font face="arial, sans-serif" style="" size="2" color="#000000"><br></font></div><div><font face="arial, sans-serif" style="" size="2" color="#000000">Regards,</font></div><div><font color="#000000" face="arial, sans-serif" size="2">Jiapeng</font></div><div><br></div><br>On Tuesday, October 1, 2019 at 10:50:17 PM UTC+8, Travis wrote:<blockquote class="gmail_quote" style="margin: 0;margin-left: 0.8ex;border-left: 1px #ccc solid;padding-left: 1ex;"><div dir="ltr"><div>Hi,</div><div><br></div><div>Metallic systems need Fermi-Dirac smearing to converge. Something like this is more fitting. Add in a section for GEO_OPT or CELL_OPT and add coordinates and a KIND section. The bits in bold are most pertinent to your case.<br></div><div><br></div><div><code><div style="background-color:rgb(250,250,250);border-color:rgb(187,187,187);border-style:solid;border-width:1px"><code><div><span style="color:#660">&</span><span style="color:#000">FORCE_EVAL<br> METHOD QUICKSTEP<br> STRESS_TENSOR ANALYTICAL<br> </span><span style="color:#660">&</span><span style="color:#000">DFT<br>  UKS T<br>  CHARGE </span><span style="color:#066">0</span><span style="color:#000"><br>  MULTIPLICITY </span><span style="color:#066">1</span><span style="color:#000"><br>  BASIS_SET_FILE_NAME data</span><span style="color:#660">/</span><span style="color:#000">BASIS_MOLOPT<br>  POTENTIAL_FILE_NAME data</span><span style="color:#660">/</span><span style="color:#000">POTENTIAL<br>  </span><span style="color:#660">&</span><span style="color:#000">MGRID<br>   CUTOFF </span><span style="color:#066">800</span><span style="color:#000"><br>   NGRIDS </span><span style="color:#066">5</span><span style="color:#000"><br>   RELATIVE_CUTOFF </span><span style="color:#066">50</span><span style="color:#000"><br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> MGRID<br>  </span><span style="color:#660">&</span><span style="color:#000">QS<br>   EPS_DEFAULT </span><span style="color:#066">1.0E-12</span><span style="color:#000"><br>   METHOD GPW<br></span><b><span style="color:#000">   EXTRAPOLATION USE_GUESS </span></b><span style="color:#000"><br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> QS<br>  </span><span style="color:#660">&</span><span style="color:#000">SCF<br>   EPS_SCF </span><span style="color:#066">1e-06</span><span style="color:#000"><br>   MAX_SCF </span><span style="color:#066">200</span><span style="color:#000"><br>   SCF_GUESS RESTART<br>   </span><b><span style="color:#000">ADDED_MOS  </span></b><b><span style="color:#066">400</span><span style="color:#000"><br>   </span><span style="color:#660">&</span><span style="color:#000">SMEAR  T<br>    METHOD  FERMI_DIRAC<br>    ELECTRONIC_TEMPERATURE     </span><span style="color:#066">3.0000000000000000E+02</span><span style="color:#000"><br>   </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> SMEAR<br>   </span><span style="color:#660">&</span><span style="color:#000">MIXING  T<br>    METHOD  BROYDEN_MIXING<br>    ALPHA     </span><span style="color:#066">4.0000000000000002E-01</span><span style="color:#000"><br>    NMIXING  </span><span style="color:#066">5</span><span style="color:#000"><br>    NBUFFER  </span><span style="color:#066">8</span><span style="color:#000"><br>   </span><span style="color:#660">&</span><span style="color:#008">END</span></b><b><span style="color:#000"> MIXING</span></b><span style="color:#000"><br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> SCF<br>  </span><span style="color:#660">&</span><span style="color:#000">XC<br>   FUNCTIONAL_ROUTINE NEW<br>   DENSITY_CUTOFF </span><span style="color:#066">1.0e-12</span><span style="color:#000"><br>   GRADIENT_CUTOFF </span><span style="color:#066">1.0e-12</span><span style="color:#000"><br>   TAU_CUTOFF </span><span style="color:#066">1.0e-12</span><span style="color:#000"><br>   </span><span style="color:#660">&</span><span style="color:#000">XC_FUNCTIONAL<br>    </span><span style="color:#660">&</span><span style="color:#000">PBE<br>     PARAMETRIZATION </span><span style="color:#606">Orig</span><span style="color:#000"><br>    </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> PBE<br>   </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> XC_FUNCTIONAL<br>   </span><span style="color:#660">&</span><span style="color:#000">XC_GRID<br>    USE_FINER_GRID  T<br>   </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> XC_GRID<br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> XC<br>  </span><span style="color:#660">&</span><span style="color:#000">POISSON<br>   POISSON_SOLVER  PERIODIC<br>   PERIODIC  XYZ<br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> POISSON<br></span><b><span style="color:#000">  </span><span style="color:#660">&</span><span style="color:#000">KPOINTS<br>   SCHEME  MONKHORST</span><span style="color:#660">-</span><span style="color:#000">PACK  </span><span style="color:#066">4</span><span style="color:#000">  </span><span style="color:#066">4</span><span style="color:#000">  </span><span style="color:#066">4</span><span style="color:#000"><br>   FULL_GRID  </span><span style="color:#660">.</span><span style="color:#000">TRUE</span><span style="color:#660">.</span><span style="color:#000"><br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> KPOINTS</span></b><span style="color:#000"><br> </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> DFT<br> </span><span style="color:#660">&</span><span style="color:#000">SUBSYS<br>  </span><span style="color:#660">&</span><span style="color:#000">CELL<br>   ABC     </span><span style="color:#066">6.7638</span><span style="color:#000"> </span><span style="color:#066">6.7638</span><span style="color:#000"> </span><span style="color:#066">6.7638</span><span style="color:#000"><br>   ALPHA_BETA_GAMMA   </span><span style="color:#066">90.000000</span><span style="color:#000">  </span><span style="color:#066">90.000000</span><span style="color:#000">  </span><span style="color:#066">90.000000</span><span style="color:#000"><br>   PERIODIC XYZ<br>   MULTIPLE_UNIT_CELL  </span><span style="color:#066">1</span><span style="color:#000">  </span><span style="color:#066">1</span><span style="color:#000">  </span><span style="color:#066">1</span><span style="color:#000"><br>  </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> CELL<br> </span><span style="color:#660">...</span><span style="color:#000"><br> </span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> SUBSYS<br></span><span style="color:#660">&</span><span style="color:#008">END</span><span style="color:#000"> FORCE_EVAL</span></div></code></div><span style="color:#000"><br></span></code></div><div><code><span style="color:#000">Additionally, note that the Cholesky decomposition error is usually related to using too large a basis set or too diffuse a basis set for the problem. For a double-zeta flavor of basis set, the EPS_PGF_ORB fix is a reasonable approach to correct the issue. But for triple-zeta and quadruple-zeta (or higher) basis sets, it is usually better to select a smaller or less diffuse basis set. It is very common to use the MOLOPT-SR variants as they do well for solids and condensed phase simulations. The short-ranged (SR) variant is purpose built to be less diffuse, so it's more likely any overlap issues come from poor initial geometry, even with one of the triple-zeta SR basis sets. Setting </span></code><code><span style="color:#000"><code><code><span style="color:#000">NGRIDS </span><span style="color:#066">5</span><span style="color:#000"> as above is useful for accelerating calculations with the MOLOPT basis sets.<br></span></code></code></span></code></div><div><code><span style="color:#000"><br></span></code></div>-T</div><div dir="ltr"><br></div><div dir="ltr">On Monday, September 30, 2019 at 1:38:35 PM UTC-3, Jiapeng Liu wrote:<blockquote class="gmail_quote" style="margin:0;margin-left:0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Dear CP2K users,<div><br></div><div>I am just learning CP2K from the official website and trying to relax a Li bcc structure where 16 atoms are included. I modified from the example shown here <a href="https://www.cp2k.org/exercises:2019_conexs_newcastle:ex3#part_1optimizing_geometry" rel="nofollow" target="_blank" onmousedown="this.href='https://www.google.com/url?q\x3dhttps%3A%2F%2Fwww.cp2k.org%2Fexercises%3A2019_conexs_newcastle%3Aex3%23part_1optimizing_geometry\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHYt-dF0ozUSJ3gYQSH2MCCwFNY6w';return true;" onclick="this.href='https://www.google.com/url?q\x3dhttps%3A%2F%2Fwww.cp2k.org%2Fexercises%3A2019_conexs_newcastle%3Aex3%23part_1optimizing_geometry\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHYt-dF0ozUSJ3gYQSH2MCCwFNY6w';return true;">https://www.cp2k.org/<wbr>exercises:2019_conexs_<wbr>newcastle:ex3#part_<wbr>1optimizing_geometry</a> for MgO. But I met some problems running my input file. The output says that "Cholesky decompose failed: the matrix is not positive definite or ill-conditioned". I am quite confused where is the error from. Can you guys help me on this. Thanks for your kind help.</div><div><br></div><div>I also attach my input file here, thank you very much.</div><p style="text-align:center;clear:both"><img src="https://groups.google.com/group/cp2k/attach/9b0c4e573603c/WeChat%20Screenshot_20191001003731.png?part=0.2&view=1&authuser=0" alt="WeChat Screenshot_20191001003731.png" style="margin-left:1em;margin-right:1em" width="320" height="172"></p><div><br></div></div></blockquote></div></blockquote></div></div>