<div dir="ltr">Yes, it was weird to find bad performance internode when I run the popt version to check MPI processes in the Intel cluster. <div>It was scaling very well when I tested within a node, but when I started to run internode, the runtime increased considerably. <div>I thought I did not do a good installation but I going to try with another stable version as CK2K4.1 to see if it behaves similarly or not. </div><div>When I will have lots of runtimes to compare, I think I have to open another thread topic because this one has been solved thanks to your kind support Mister Alfio.</div><div> </div><div>Best wishes,</div><div>Julita Inca El martes, 28 de mayo de 2019, 14:06:34 (UTC+1), Alfio Lazzaro escribió:<blockquote class="gmail_quote" style="margin: 0;margin-left: 0.8ex;border-left: 1px #ccc solid;padding-left: 1ex;"><div dir="ltr"><div>You are welcome!</div><div> </div><div>As a suggestion, you probably want to compare the single-node performance, but MPI is not an issue and you can even go for ssmp CP2K (only OpenMP).</div><div>I'm not sure what you want to compare between Intel and Cray since Cray uses Intel CPUs on XC30...</div><div>Each supercomputer has an MPI version installed which is optimized for the network, that's the case for Cray-mpich. You are not "allowed" to install OpenMPI and use it.</div><div>Concerning ARM, this is a bit more complicated, since currently CP2K doesn't support it and you have to build some of the libraries (in particular libsmm instead of libxsmm).</div><div> </div><div>Please post if you have any trouble.</div><div> </div><div>Alfio</div><div> </div> Il giorno martedì 28 maggio 2019 14:54:13 UTC+2, JULITA INCA CHIROQUE ha scritto:<blockquote style="margin:0;margin-left:0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">OK, attached is the output of ftn -v<div>I think it is using gcc/7.3.0</div><div>What I am planning to do is a comparison of the benchmark of CP2K in different architectures (Intel, Cray, ARM), then I was trying to use the same packages and versions but it seems that it will not be possible at all.</div><div>I was thinking of openmpi as free software in the three environments to have a fair comparison.</div><div>So far, I will test more samples of water in my Cray supercomputer.</div><div>Thanks so much again Mister Alfio.</div><div>Julita Inca</div><div><img src="https://lh5.googleusercontent.com/proxy/Tcxc5jhEBzp0PvuEBkj_1zBCYUcOmI4Er4eOVJiVHgQxHwFgOa8=w5000-h5000" alt="Screen Shot 2019-05-28 at 1.50.12 PM.png" style="margin-left:1em;margin-right:1em" width="320" height="200"><div> El martes, 28 de mayo de 2019, 13:34:03 (UTC+1), Alfio Lazzaro escribió:<blockquote style="margin:0;margin-left:0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>So, first of all you have to run</div><div> </div><div>ftn -v </div><div> </div><div>to make sure which compiler you are using to compile CP2K. Just to be sure, after the swap of the compiler, you have to recompile the toolchain command and recompile CP2K...</div><div> </div><div>Concerning Cray-mpich, this is the default on Cray and it is used by aprun (otherwise it would not work). Therefore, if you are able to run with MPI then it must be Cray-mpich.</div><div> </div><div>I'm not aware of any Cray openmpi implementation (do you have an openmpi module in your system?)</div><div> </div><div>Alfio</div><div> </div><div> </div> Il giorno martedì 28 maggio 2019 14:16:32 UTC+2, JULITA INCA CHIROQUE ha scritto:<blockquote style="margin:0;margin-left:0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Thank you so much dear Alfio!!!<div> </div><div>From the output attached, can I say that I was able to run CP2K6.1 with gcc7.3.0? </div><div> </div><div>Could you please also confirm that [01] is OK at saying that <code style="color:black;font-family:monospace,Courier;background-color:rgb(249,249,249);border:1px solid rgb(221,221,221);border-top-left-radius:2px;border-top-right-radius:2px;border-bottom-right-radius:2px;border-bottom-left-radius:2px;padding:1px 4px;font-size:14px">PrgEnv-gnu</code> is used to build MPICH? </div><div>I am still trying to find out what version of MPICH is being used, the same for Scalapack. Can I also ask if it is possible to use in Cray openmpi?</div><div> </div><div>Best regards Mister Alfio!</div><div>Julita Inca</div><div> </div><div>[01] <a href="https://wiki.mpich.org/mpich/index.php/Cray" rel="nofollow" target="_blank" onmousedown="this.href='https://www.google.com/url?q\x3dhttps%3A%2F%2Fwiki.mpich.org%2Fmpich%2Findex.php%2FCray\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNGNd5_3YDUY4ZA0ULdWYxuKu8eIag';return true;" onclick="this.href='https://www.google.com/url?q\x3dhttps%3A%2F%2Fwiki.mpich.org%2Fmpich%2Findex.php%2FCray\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNGNd5_3YDUY4ZA0ULdWYxuKu8eIag';return true;">https://wiki.mpich.org/mpich/index.php/Cray</a> <img src="https://lh5.googleusercontent.com/proxy/Tcxc5jhEBzp0PvuEBkj_1zBCYUcOmI4Er4eOVJiVHgQxHwFgOa8=w5000-h5000" alt="Screen Shot 2019-05-28 at 1.10.41 PM.png" style="margin-left:1em;margin-right:1em" width="320" height="200"><div> </div><div> El sábado, 25 de mayo de 2019, 20:18:56 (UTC+1), JULITA INCA CHIROQUE escribió:<blockquote style="margin:0;margin-left:0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr">Hello,</div><div dir="ltr"> </div><div dir="ltr">I was able to install cp2k6.1 with these options:</div><div dir="ltr"> </div><div dir="ltr"><code style="color:rgb(0,0,0)">./install_cp2k_toolchain.sh -j 72 --enable-cuda=no --with-scalapack --with-libxsmm=no --with-reflapack=no --with-libint=no --with-libxc=no --with-openblas=no</code></div><div dir="ltr"> </div><div dir="ltr">Then, I executed the commands:</div><div dir="ltr"><pre lang="shell" style="color:rgb(0,0,0)">cp /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/toolchain/install/arch/* arch/ </pre><pre lang="shell" style="color:rgb(0,0,0)">source /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/toolchain/install/setup </pre><pre lang="shell" style="color:rgb(0,0,0)">cd makefiles/</pre><pre lang="shell" style="color:rgb(0,0,0)">However, the installation look into another $HOME path, even though I set in source my cp2k path installation:</pre><div> jinca@eslogin005:/home2/y07/y07/cse/xalt/0.6.0/bin> source /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/toolchain/install/setup jinca@eslogin005:/home2/y07/y07/cse/xalt/0.6.0/bin> cd /work/d167/d167/jinca/Dissertation/Downloads/cp2k/makefiles/ jinca@eslogin005:/work/d167/d167/jinca/Dissertation/Downloads/cp2k/makefiles> make -j 72 ARCH=local VERSION="popt" Discovering programs ... Removing stale archives for popt ... Resolving dependencies for popt ... /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/acc/acc_stream.F acc_stream.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/dbcsr/dist/dbcsr_min_heap.F dbcsr_min_heap.F90 Updating archive /work/d167/d167/jinca/Dissertation/Downloads/cp2k/lib/local/popt/libcp2kmpiwrap.a ar: creating /work/d167/d167/jinca/Dissertation/Downloads/cp2k/lib/local/popt/libcp2kmpiwrap.a /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/erf_fn.F erf_fn.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/spherical_harmonics.F spherical_harmonics.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/cp_iter_types.F cp_iter_types.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/list_callstackentry.F list_callstackentry.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/list_routinestat.F list_routinestat.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"dbcsr/dist/dbcsr_min_heap.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/dbcsr/dist/' dbcsr_min_heap.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/dict.F dict.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"acc/acc_stream.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/acc/' acc_stream.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/cuda_profiling.F cuda_profiling.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/lebedev.F lebedev.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/mathlib.F mathlib.F90 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/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/periodic_table.F periodic_table.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/metadyn_tools/graph_utils.F graph_utils.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/input/cp_parser_inpp_types.F cp_parser_inpp_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/erf_fn.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' erf_fn.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/input/cp_parser_status_types.F cp_parser_status_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/cp_iter_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' cp_iter_types.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/mixed_energy_types.F mixed_energy_types.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/subsys/shell_potential_types.F shell_potential_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/cuda_profiling.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' cuda_profiling.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/subsys/damping_dipole_types.F damping_dipole_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/spherical_harmonics.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' spherical_harmonics.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/subsys/atprop_types.F atprop_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/mathlib.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' mathlib.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/string_table.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' string_table.F90 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-D__SHORT_FILE__="\"common/structure_factor_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' structure_factor_types.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/pw/pw_grid_types.F pw_grid_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/list_callstackentry.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' list_callstackentry.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/lebedev.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' lebedev.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/cp_para_env.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' cp_para_env.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/pw/fft/mltfftsg_tools.F mltfftsg_tools.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/parallel_rng_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' parallel_rng_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/gamma.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' gamma.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/pw/fft/fftw3_lib.F fftw3_lib.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/dict.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' dict.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/powell.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' powell.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/xml_parser.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' xml_parser.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/splines.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' splines.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/eigenvalueproblems.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' eigenvalueproblems.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/whittaker.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' whittaker.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"metadyn_tools/graph_utils.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/metadyn_tools/' graph_utils.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/linear_systems.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' linear_systems.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"common/periodic_table.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/common/' periodic_table.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"input/cp_parser_inpp_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/input/' cp_parser_inpp_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"subsys/shell_potential_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/subsys/' shell_potential_types.F90 /work/d167/d167/jinca/Dissertation/Downloads/cp2k/tools/build_utils/fypp -n /work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/fm/cp_blacs_calls.F cp_blacs_calls.F90 /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable Warning: Unable to determine ld version. Default linker script will be used. /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable Error: Problem invoking pkg-config. Warning: Unable to determine ld version. Warning: Unable to determine ld version. Default linker script will be used. Default linker script will be used. /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable Warning: Unable to determine ld version. Default linker script will be used. /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable Error: Problem invoking pkg-config. /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable Warning: Unable to determine ld version. Default linker script will be used. Warning: Unable to determine ld version. /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable Default linker script will be used. Error: Problem invoking pkg-config. /home/y07/y07/cse/xalt/0.6.0/bin/ld: fork: Resource temporarily unavailable /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 44: /xalt_helper_functions.sh: No such file or directory Error: Problem invoking pkg-config. /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 44: /xalt_helper_functions.sh: No such file or directory Failed to fork - Resource temporarily unavailable /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 48: request_tracing: command not found /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 48: request_tracing: command not found /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 55: find_real_command: command not found /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 55: find_real_command: command not found /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 60: find_working_python: command not found /home/y07/y07/cse/xalt/0.6.0/bin/ld: line 60: find_working_python: command not found Warning: Unable to determine ld version. Default linker script will be used. Warning: Unable to determine ld version. Default linker script will be used. ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"input/cp_parser_status_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/input/' cp_parser_status_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE="\"Sat May 25 20:08:14 BST 2019\"" -D__COMPILE_HOST="\"eslogin005\"" -D__COMPILE_REVISION="\"svn:18464\"" -D__DATA_DIR="\"/work/d167/d167/jinca/Dissertation/Downloads/cp2k/data\"" -D__SHORT_FILE__="\"mixed_energy_types.F\"" -I'/work/d167/d167/jinca/Dissertation/Downloads/cp2k/src/' mixed_energy_types.F90 ftn -c -march=native -fno-omit-frame-pointer -g -O3 -funroll-loops -ffast-math -ffree-form -std=f2003 -fimplicit-none -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only -D__parallel -D__MPI_VERSION=3 -D__FFTW3 -D__SCALAPACK -D__COMPILE_ARCH="\"local\"" -D__COMPILE_DATE=</div></div></div></div></div></div></blockquote></div></div></div></blockquote></div></blockquote></div></div></div></blockquote></div>...</blockquote></div></div></div>