<div dir="ltr">Hi, Matthias,<div><br></div><div>Thanks. I checked the error_summary and all the 17 error tests are related with He-H system with cdft procedure. And some are slightly larger than the numerical tolerance while others are larger with several magnitudes. I look it up through google and this google group, it seems like it has something to do with the complier (Intel(R) Parallel Studio XE 2019 for Linux I am using). So since I am just intending to use the AIMD module, are those error tests related or maybe I could ignore them if they are not related? Please see the error_summary and summary.txt in the attachments. Thanks again.<br><br>在 2019年2月19日星期二 UTC-5上午2:49:04,Matthias Krack写道:<blockquote class="gmail_quote" style="margin: 0;margin-left: 0.8ex;border-left: 1px #ccc solid;padding-left: 1ex;">
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<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Hi</span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">A clean regression test run is the best way to validate a CP2K installation. You should check the few failing tests, if these failures are serious
or just slightly larger than the numerical threshold value.</span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Matthias</span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> <a href="javascript:" target="_blank" gdf-obfuscated-mailto="RrKM7KmdGwAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">cp...@googlegroups.com</a> <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="RrKM7KmdGwAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">cp...@googlegroups.com</a>>
<b>On Behalf Of </b>Shuai Jiang<br>
<b>Sent:</b> Montag, 18. Februar 2019 17:25<br>
<b>To:</b> cp2k <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="RrKM7KmdGwAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">cp...@googlegroups.com</a>><br>
<b>Subject:</b> Re: [CP2K:11293] About energy change for the AIMD equlibration process</span></p>
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<p class="MsoNormal">Hi, Matthias,</p>
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<p class="MsoNormal">Thanks a lot. I am running classical MD for water cluster pre-equilibration with flexible TIP3P force field and then run AIMD according to the related literature for validation of the correct installation of CP2K, so we will see that later.
Is there a faster way to make sure the installation is ok? I have ran the recommended Regression Testing and most of them are correct (2709 out of 2734 tests for CP2K 7.0), is this result enough to prove that the installation is ok? Thanks.</p>
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<p class="MsoNormal"><br>
<span style="font-family:"MS Gothic"">在</span> 2019<span style="font-family:"MS Gothic"">年</span>2<span style="font-family:"MS Gothic"">月</span>18<span style="font-family:"MS Gothic"">日星期一</span> UTC+8<span style="font-family:"MS Gothic"">下午</span>4:12:46<span style="font-family:"MS Gothic"">,</span>Matthias
Krack<span style="font-family:"MS Gothic"">写道:</span></p>
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<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Hi
</span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">The H2O-32.inp input is part of an input set to benchmark the scalability of CP2K. Thus,
it was designed in a first place for such purpose. The input settings are not optimal for liquid water simulations using DFT (see recent CP2K papers on water for better simulation protocols). Second, the initial configuration was retrieved from an MD run using
TIP5P. Though that configuration might be a reasonable initial guess, it has not been equilibrated for the selected DFT setup, e.g. TIP5P implies a fixed molecular structure for all water molecules, which will cause significant structure relaxations and thus
energy fluctuations during the first ps. That is most likely the reason for the observed drift and not the cp2k installation.</span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Matthias</span></p>
<p class="MsoNormal"><span lang="EN-GB" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"> </span></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">
<a>cp...@googlegroups.com</a> <<a>cp...@googlegroups.com</a>>
<b>On Behalf Of </b>Shuai Jiang<br>
<b>Sent:</b> Sonntag, 17. Februar 2019 23:10<br>
<b>To:</b> cp2k <<a>cp...@googlegroups.com</a>><br>
<b>Subject:</b> [CP2K:11285] About energy change for the AIMD equlibration process</span></p>
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<p class="MsoNormal">Dear all,</p>
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<p class="MsoNormal">I tried to run the H2O-32.inp in the tests/QS/benchmark folder after installing CP2K6.1 in the CentOS. And the figure within 250fs or so shows the energy increases, which I think
this may be called "drift". I think this energy drift should not happen as the clusters have been equilibrated under the TIP5P force fileld. I have looked it up in the google group and found maybe it is due to the intel compiler(<a href="https://groups.google.com/forum/#!msg/cp2k/A2Rf79443D4/wjYK6lBbAQAJ" target="_blank" rel="nofollow" onmousedown="this.href='https://groups.google.com/forum/#!msg/cp2k/A2Rf79443D4/wjYK6lBbAQAJ';return true;" onclick="this.href='https://groups.google.com/forum/#!msg/cp2k/A2Rf79443D4/wjYK6lBbAQAJ';return true;">https://groups.<wbr>google.com/forum/#!msg/cp2k/<wbr>A2Rf79443D4/wjYK6lBbAQAJ</a>).
So I tried reinstall the CP2K (5.1, 6.1, 7.0) as well as reinstall different Intel compilers (Intel 2014, 2019). Even after all those trials, I could still see the energy drift, could anyone tell me what's wrong? Thanks a lot.</p>
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