<div dir="ltr">Dear Cristiana<div><br></div><div>Most probably there was not enough allocated memory for this job.</div><div>Try to increase the number of computing nodes.</div><div>regards</div><div>Marcella<br><br>On Monday, April 10, 2017 at 5:09:06 PM UTC+2, Cristiana Passiu wrote:<blockquote class="gmail_quote" style="margin: 0;margin-left: 0.8ex;border-left: 1px #ccc solid;padding-left: 1ex;"><div dir="ltr">Dear all,<div>I'm trying to run a calculation to obtain the HOMO-LUMO gap in a ZrO2 system, but the job stopped running with the messages reported below. Do you know what they mean? I attached also my input.</div><div><br></div><div>Many thanks,</div><div>Cristiana</div><div><br></div><div>"<span style="font-family:Menlo;font-size:11px">Exited with exit code 1.</span></div>
<p><span></span><br></p>
<p><span>Resource usage summary:</span></p>
<p><span></span><br></p>
<p><span> CPU time : 32.31 sec.</span></p>
<p><span> Max Memory : 2127 MB</span></p>
<p><span> Average Memory : 2026.00 MB</span></p>
<p><span> Total Requested Memory : 16384.00 MB</span></p>
<p><span> Delta Memory : 14257.00 MB</span></p>
<p><span> (Delta: the difference between Total Requested Memory and Max Memory.)</span></p>
<p><span> Max Processes : 19</span></p>
<p><span> Max Threads : 52</span></p>
<p><span></span><br></p>
<p><span>The output (if any) follows:</span></p>
<p><span></span><br></p>
<p><span></span><br></p>
<p><span>Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p><span></span><br></p>
<p><span>Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p><span></span><br></p>
<p><span>Backtrace for this error:</span></p>
<p><span></span><br></p>
<p><span>Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p><span></span><br></p>
<p><span>Backtrace for this error:</span></p>
<p><span></span><br></p>
<p><span>Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p><span></span><br></p>
<p><span>Backtrace for this error:</span></p>
<p><span></span><br></p>
<p><span>Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p><p><span><br></span></p><p><span>------------------------------<wbr>------------------------------<wbr>--------------</span></p><p><span>mpirun has exited due to process rank 4 with PID 30274 on</span></p><p><span>node e3221 exiting improperly. There are two reasons this could occur:</span></p><p><span></span><br></p><p><span>1. this process did not call "init" before exiting, but others in</span></p><p><span>the job did. This can cause a job to hang indefinitely while it waits</span></p><p><span>for all processes to call "init". By rule, if one process calls "init",</span></p><p><span>then ALL processes must call "init" prior to termination.</span></p><p><span></span><br></p><p><span>2. this process called "init", but exited without calling "finalize".</span></p><p><span>By rule, all processes that call "init" MUST call "finalize" prior to</span></p><p><span>exiting or it will be considered an "abnormal termination"</span></p><p><span></span><br></p><p><span>This may have caused other processes in the application to be</span></p><p><span>terminated by signals sent by mpirun (as reported here).</span></p><p><span>
</span></p><p><span>------------------------------<wbr>------------------------------<wbr>--------------"</span></p><p><span><br></span></p><p><span><span style="font-family:Arial,Helvetica,sans-serif;font-size:13px">I also obtained a series of files called "</span>zirconia_localLog_p*.out<span style="font-family:Arial,Helvetica,sans-serif;font-size:13px">", whose content is as follows:</span><br></span></p><p><span><span style="font-family:Arial,Helvetica,sans-serif;font-size:13px"><br></span></span></p><p><span><span style="font-family:Arial,Helvetica,sans-serif;font-size:13px">"</span></span><span> </span><span>*** Local logger file of MPI task 5 in communicator 0 ***</span></p>
<p><span> *** PID = 30275</span></p>
<p><span> *** Hostname = e3221 </span></p><p><span> </span></p>
<p><span> ===== Routine Calling Stack ===== </span></p>
<p><span></span><br></p>
<p><span> 8 integrate_four_center</span></p>
<p><span> 7 hfx_ks_matrix</span></p>
<p><span> 6 qs_ks_build_kohn_sham_matrix</span></p>
<p><span> 5 qs_ks_update_qs_env</span></p>
<p><span> 4 init_scf_loop</span></p>
<p><span> 3 scf_env_do_scf</span></p>
<p><span> 2 qs_energies_scf</span></p>
<p><span> 1 CP2K</span></p>
<p><span>zirconia_localLog_p5.out (END) </span><span style="color:rgb(34,34,34);font-family:Arial,Helvetica,sans-serif;font-size:13px"> </span><span style="color:rgb(34,34,34);font-family:Arial,Helvetica,sans-serif;font-size:13px">"</span></p>
<p><span><br></span></p><p><span><br></span></p><p><span><br></span></p></div></blockquote></div></div>