<div dir="ltr">Hello,<div><br></div><div>I am a beginner to cp2k and I have run into a problem. I am running a molecular dynamics simulation with an NPT_F (flexible cell) ensemble, where each a restart file is generated every 10 MD steps and resubmitted as the input every 40 or so steps. However, I have noticed that the conserved quantity increases after each restart resulting in a stepwise pattern (see attached). The MD simulation runs without warning, though. I was wondering if any one else has tried to use restart files with a flexible cell and if so, what information is missing information in my restart files generated to preserve the same conserved quantity.. </div><div><br></div><div>Thanks a lot,</div><div><br></div><div>Amandine Chouanard</div><div><br></div><div><br></div><div><br></div><div>Additional information:</div><div>cp2k version: 2.7</div><div><br></div><div>Here is my input file: (The restart file is a bit long, so I can post it separately if requested.)<br></div><div>







<p class="p1"><span class="s1"><font color="#999999">&GLOBAL</font></span></p><p class="p1"><span class="s1"><font color="#999999">  PROJECT metaD-MgH2-</font></span></p><p class="p1"><span class="s1"><font color="#999999">  RUN_TYPE MD</font></span></p><p class="p1"><span class="s1"><font color="#999999">  PRINT_LEVEL LOW</font></span></p><p class="p1"><span class="s1"><font color="#999999">&END GLOBAL</font></span></p><p class="p2"><font color="#999999"><span class="s1"></span><br></font></p><p class="p1"><span class="s1"><font color="#999999">&MOTION</font></span></p><p class="p1"><span class="s1"><font color="#999999">  &MD</font></span></p><p class="p1"><span class="s1"><font color="#999999">    ENSEMBLE  NPT_F</font></span></p><p class="p1"><span class="s1"><font color="#999999">    STEPS  100000</font></span></p><p class="p1"><span class="s1"><font color="#999999">    TIMESTEP     4.9999999999999994E-01</font></span></p><p class="p1"><span class="s1"><font color="#999999">    TEMPERATURE     2.9800000000000000E+02</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &BAROSTAT</font></span></p><p class="p1"><span class="s1"><font color="#999999">      PRESSURE [bar] 1.0</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &END</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &THERMOSTAT</font></span></p><p class="p1"><span class="s1"><font color="#999999">      TYPE  CSVR</font></span></p><p class="p1"><span class="s1"><font color="#999999">      REGION  MASSIVE</font></span></p><p class="p1"><span class="s1"><font color="#999999">      &CSVR</font></span></p><p class="p1"><span class="s1"><font color="#999999">        TIMECON     4.9999999999999993E+01</font></span></p><p class="p1"><span class="s1"><font color="#999999">      &END CSVR</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &END THERMOSTAT</font></span></p><p class="p1"><span class="s1"><font color="#999999">  &END MD</font></span></p><p class="p1"><span class="s1"><font color="#999999">  &PRINT</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &RESTART  SILENT</font></span></p><p class="p1"><span class="s1"><font color="#999999">      &EACH</font></span></p><p class="p1"><span class="s1"><font color="#999999">        MD  10</font></span></p><p class="p1"><span class="s1"><font color="#999999">      &END EACH</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &END RESTART</font></span></p><p class="p1"><span class="s1"><font color="#999999">  &END PRINT</font></span></p><p class="p2"><font color="#999999"><span class="s1"></span><br></font></p><p class="p1"><span class="s1"><font color="#999999">  &FREE_ENERGY</font></span></p><p class="p1"><span class="s1"><font color="#999999">    &METADYN</font></span></p><p class="p1"><span class="s1"><font color="#999999">      DO_HILLS FALSE</font></span></p><p class="p2"><font color="#999999"><span class="s1"></span><br></font></p><p class="p1"><span class="s1"><font color="#999999">      &METAVAR</font></span></p><p class="p1"><span class="s1"><font color="#999999">        SCALE  1.0</font></span></p><p class="p1"><span class="s1"><font color="#999999">        COLVAR 1</font></span></p><p class="p1"><span class="s1"><font color="#999999">      &END METAVAR</font></span></p><p class="p2"><font color="#999999"><span class="s1"></span><br></font></p><p class="p1"><span class="s1"><font color="#999999">      &METAVAR</font></span></p><p class="p1"><span class="s1"><font color="#999999">        SCALE  1.0</font></span></p><p class="p1"><span class="s1"><font color="#999999">        COLVAR 2</font></span></p><p class="p1"><span class="s1"><font color="#999999">      &END METAVAR</font></span></p><p class="p2"><font color="#999999"><span class="s1"></span><br></font></p><p class="p1"><span class="s1"><font color="#999999">     &METAVAR</font></span></p><p class="p1"><span class="s1"><font color="#999999">        SCALE  1.0</font></span></p><p class="p1">






















































</p><p class="p1"><span class="s1"><font color="#999999">        COLVAR 3</font></span></p>







<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">      &END METAVAR</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">      &METAVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        SCALE  1.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        COLVAR 4</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END METAVAR</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">      &PRINT</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        &COLVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          &EACH</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">            MD 1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          &END EACH</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          COMMON_ITERATION_LEVELS 100000</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        &END COLVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END PRINT</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END METADYN</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">  &END FREE_ENERGY</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">&END MOTION</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">&FORCE_EVAL</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">  STRESS_TENSOR ANALYTICAL</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">  METHOD QS # use Quickstep - electronic structure module of CP2K</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">  &DFT</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    BASIS_SET_FILE_NAME ${DATA_PATH}/GTH_BASIS_SETS</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    POTENTIAL_FILE_NAME ${DATA_PATH}/GTH_POTENTIALS</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &QS</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      ALMO_SCF F</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      EPS_DEFAULT 1.0E-13 # overall accuracy of the Kohn-Sham matrix build</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      EXTRAPOLATION USE_GUESS</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END QS</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &MGRID</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      CUTOFF 400</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      NGRIDS 4</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END MGRID</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &XC</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &XC_FUNCTIONAL BLYP</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END XC_FUNCTIONAL</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END XC</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &SCF</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      ADDED_MOS 200</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      EPS_SCF 1.0E-7</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      SCF_GUESS ATOMIC</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      MAX_SCF  500</font></span></p>







<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">      &MIXING</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          METHOD PULAY_MIXING #DIRECT_P_MIXING</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          ALPHA   0.30</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">      &PRINT</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        &RESTART</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          BACKUP_COPIES 1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          &EACH</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">            QS_SCF 1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">            JUST_ENERGY 1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          &END EACH</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        &END RESTART</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END PRINT</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &END SCF</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &KPOINTS</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">       SCHEME  MONKHORST-PACK  4 6 4</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">       SYMMETRY FALSE</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">       EPS_GEO 1.e-8</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">       FULL_GRID TRUE</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">       VERBOSE TRUE</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">       PARALLEL_GROUP_SIZE  4</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END KPOINTS</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">  &END DFT</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">  &SUBSYS</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &CELL</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      ABC 9.002 4.501 6.04</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      MULTIPLE_UNIT_CELL 1 1 1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        &CELL_REF</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">          ABC 10.8024 5.4012 7.248</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        &END CELL_REF</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END CELL</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &TOPOLOGY</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      MULTIPLE_UNIT_CELL 1 1 1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END</font></span></p>







<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &COORD</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      SCALED T</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.75   0.0    0.75</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.902  0.304  0.75</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.598  0.696  0.75</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.0    0.5    0.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.152  0.196  0.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.348  0.804  0.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.25   0.0    0.75</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.402  0.304  0.75</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.098  0.696  0.75</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.5    0.5    0.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.652  0.196  0.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.848  0.804  0.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.75   0.0    0.25</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.902  0.304  0.25</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.598  0.696  0.25</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.0    0.5    0.5</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.152  0.196  0.5</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.348  0.804  0.5</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.25   0.0    0.25</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.402  0.304  0.25</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.098  0.696  0.25</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      Mg   0.5    0.5    0.5</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.652  0.196  0.5</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      H    0.848  0.804  0.5</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END COORD</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &KIND Mg</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      BASIS_SET TZV2P-GTH</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      POTENTIAL GTH-BLYP-q2</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END KIND</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &KIND H</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      BASIS_SET TZV2P-GTH</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      POTENTIAL GTH-BLYP-q1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END KIND</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &COLVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_FROM 22</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_TO 2 3 5 6 8 9 11 12 14 15 17 18 20 21 23 24</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        L 4</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        RCUT 2.7</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ALPHA 6.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END COLVAR</font></span></p>







<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &COLVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_FROM 10</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_TO 2 3 5 6 8 9 11 12 14 15 17 18 20 21 23 24</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        L 6</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        RCUT 2.7</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ALPHA 6.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END COLVAR</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &COLVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_FROM 22</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_TO 1 4 7 10 13 16 19</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        L 4</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        RCUT 4.1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ALPHA 7.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END COLVAR</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">    &COLVAR</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_FROM 22</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ATOMS_TO 1 4 7 10 13 16 19</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        L 6</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        RCUT 4.1</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">        ALPHA 7.0</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">      &END QPARM</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">    &END COLVAR</font></span></p>
<p class="p1"><font color="#999999"><span class="s1"></span><br></font></p>
<p class="p2"><span class="s1"><font color="#999999">  &END SUBSYS</font></span></p>
<p class="p2"><span class="s1"><font color="#999999">&END FORCE_EVAL</font></span></p></div></div>