<div dir="ltr">Thank you very much for your answer, Mr. Ari <div><br><div>Your explanation was so clear and I got the problem solving from it. Yes, you are right that I used VMD for my simulation.</div><div>Before, I think the way to get that graphics is come from output file from CP2K (extention .xyz) that directly plot using gnuplot, without contribution from VMD.</div><div>But now, I have understood.</div><div><br></div><div>I am so sorry, I have not write tiny analysis tool that I used. I am new user CP2K from Indonesia.</div><div><br></div><div>Greetings from Indonesia,<br></div><div><br></div><div><p class="MsoNormal" style="color: rgb(80, 0, 80); font-family: arial, sans-serif; font-size: 12.8000001907349px; text-align: justify;"><span style="font-size: 12pt; color: black;">Linda Windia Sundarti</span></p><p class="MsoNormal" style="color: rgb(80, 0, 80); font-family: arial, sans-serif; font-size: 12.8000001907349px; text-align: justify;"><span style="font-size: 12pt; color: black;">Chemistry Department- Faculty of Mathematics and Natural Sciences</span></p><p class="MsoNormal" style="color: rgb(80, 0, 80); font-family: arial, sans-serif; font-size: 12.8000001907349px; text-align: justify;"><span style="font-size: 12pt; color: black;">Sepuluh Nopember Institute of Technology (ITS)</span></p><p class="MsoNormal" style="color: rgb(80, 0, 80); font-family: arial, sans-serif; font-size: 12.8000001907349px; text-align: justify;"><span style="font-size: 12pt; color: black;">Kampus ITS Sukolilo</span></p><p class="MsoNormal" style="color: rgb(80, 0, 80); font-family: arial, sans-serif; font-size: 12.8000001907349px; text-align: justify;"><span style="font-size: 12pt; color: black;">Surabaya 60111</span></p></div><div><br></div><div><br></div><div><br></div><div><br></div><div>On Sunday, January 17, 2016 at 7:41:27 PM UTC+7, Ari Paavo Seitsonen wrote:<blockquote class="gmail_quote" style="margin: 0;margin-left: 0.8ex;border-left: 1px #ccc solid;padding-left: 1ex;"><div dir="ltr"><div><div><div>Dear Linda,<br><br></div> Since no one else has apparently responded - if you are not willing to write your own tiny analysis tool (python, FORTRAN, ...), you could use a visualisation program like VMD: You mark a distance, then go to labels, choose the distance you want and create a graph out of it; this you can save in a format readable by GnuPlot.<br><br></div> Greetings from Paris,<br><br></div> apsi<br></div><div><br><div class="gmail_quote">2016-01-16 19:42 GMT+01:00 Linda Sundarti <span dir="ltr"><<a href="javascript:" target="_blank" gdf-obfuscated-mailto="AO6JZLqPEQAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">lind...@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Dear CP2K user,<div><br></div><div>Halo everyone,</div><div>I have some problem to graph my data that I conducted from CP2K. I want to make a graphic that describe the trace of distance versus simulation time (the example is in attached file). I have a data that consist of cartesian coordinat (xyz) and time step. Anybody can help me how to logical it in gnuplot or make it in gnuplot.</div><div><br></div><div>Thank you very much for the attention and some assistances.</div><div><br></div><div><br></div><div>Cheers,</div><div>Linda</div></div><span><font color="#888888"> <p></p> -- <br> You received this message because you are subscribed to the Google Groups "cp2k" group.<br> To unsubscribe from this group and stop receiving emails from it, send an email to <a href="javascript:" target="_blank" gdf-obfuscated-mailto="AO6JZLqPEQAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">cp2k+uns...@googlegroups.<wbr>com</a>.<br> To post to this group, send email to <a href="javascript:" target="_blank" gdf-obfuscated-mailto="AO6JZLqPEQAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">cp...@googlegroups.com</a>.<br> Visit this group at <a href="https://groups.google.com/group/cp2k" target="_blank" rel="nofollow" onmousedown="this.href='https://groups.google.com/group/cp2k';return true;" onclick="this.href='https://groups.google.com/group/cp2k';return true;">https://groups.google.com/<wbr>group/cp2k</a>.<br> For more options, visit <a href="https://groups.google.com/d/optout" target="_blank" rel="nofollow" onmousedown="this.href='https://groups.google.com/d/optout';return true;" onclick="this.href='https://groups.google.com/d/optout';return true;">https://groups.google.com/d/<wbr>optout</a>.<br> </font></span></blockquote></div><br><br clear="all"><br>-- <br><div><div dir="ltr"><div><div dir="ltr">-=*=-=*=-=*=-=*=-=*=-=*=-=*=-=<wbr>*=-=*=-=*=-=*=-=*=-=*=-=*=-=*=<wbr>-=*=-=*=-=*=-=*=-<br> Ari Paavo Seitsonen / <a href="javascript:" target="_blank" gdf-obfuscated-mailto="AO6JZLqPEQAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">Ari.P...@iki.fi</a> / <a href="http://www.iki.fi/~apsi/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\75http%3A%2F%2Fwww.iki.fi%2F~apsi%2F\46sa\75D\46sntz\0751\46usg\75AFQjCNG0aHwDkzSRT8XFNp-VAYw9AsYKJg';return true;" onclick="this.href='http://www.google.com/url?q\75http%3A%2F%2Fwww.iki.fi%2F~apsi%2F\46sa\75D\46sntz\0751\46usg\75AFQjCNG0aHwDkzSRT8XFNp-VAYw9AsYKJg';return true;">http://www.iki.fi/~apsi/</a><br> Ecole Normale Supérieure (ENS), Département de Chimie, Paris<br> Mobile (F) : +33 789 37 24 25 (CH) : +41 79 71 90 935<br></div></div></div></div> </div> </blockquote></div></div></div>