<div dir="ltr"><div><div><div><div><div><div>Hi Sergey,<br><br></div>the Siepmann-Sprik potential assumes intact water molecules at the interface. In your case, some dissociation seems to take place. It is checked with a simple distance criterion if we have 2 hydrogens per oxygen. You get the error message: <span style="font-size:8pt;font-family:"Lucida Console"" lang="EN-US"><b>Error in
Siepmann-Sprik part: too many H atoms, </b></span>i.e. more than 2 hydrogen per oxygen found. <br></div>The keyword ALLOW_OH_FORMATION ignores that and doesn't calculate the T3 term of the Siepmann-Sprik potential for this MD step. So the program won't stop. This keyword was actually intended for cases where water is described at the QM level, but you can try it as well. <br></div>It's strange that you have this behavior at the SPC level. However, the temperature development of your MD is very weird and has extreme jumps. So it's maybe not surprising that your O-H bonds are strangely stretched. So better control your MD setup and parameters. <br></div>btw: examples for the Siepmann-Sprik potential can be found in the regtests: /cp2k/tests/Fist/regtest-6/<br><br></div>Best regards,<br></div>Dorothea<br><div><div><div><div><div><div><div><br></div></div></div></div></div></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">2015-11-12 20:56 GMT+01:00 Sergey Doronin <span dir="ltr"><<a href="mailto:sedo...@gmail.com" target="_blank">sedo...@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><p class="MsoNormal"><span lang="EN-US">Hi, dear colleagues<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><span lang="EN-US">Last weeks I started MD calculation of Pt+H2O
system. Water was presented by SPC model, Pt-H2O described by Siepmann-Sprik
type potential (parameters of potential were taken from J.I. Siepmann and
M.Sprik // J.Chem.Phys. Vol. 102, No. 1, 1995).<u></u><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US">Unfortunately all calculations are terminated
as:<u></u><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US"> </span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span lang="EN-US">(file <b><u>Pt111_1586H2O_Test1</u></b>)<br>
<br>
</span><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>ENERGY| Total
FORCE_EVAL ( FIST ) energy (a.u.):
-31.736442138935644<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> Centre of mass
motion (COM):
x = -0.0000001751<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
y = 0.0000000386<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
z = -0.0000002641<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *******************************************************************************<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> ENSEMBLE
TYPE =
NVT<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> STEP
NUMBER =
4210<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> TIME [fs] =
421.000000<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> CONSERVED
QUANTITY [hartree] =
0.132931078387E+04<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> INSTANTANEOUS AVERAGES<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> CPU TIME
[s] = 0.97 1.01<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> ENERGY DRIFT
PER ATOM [K] = 0.746520229520E+05 0.483172888277E+05<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> POTENTIAL
ENERGY[hartree] =
-0.317364421389E+02
-0.305625006633E+02<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> KINETIC ENERGY
[hartree] = 0.294647664771E+01 0.450202835322E+01<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> TEMPERATURE
[K] = 195.611 298.881<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *******************************************************************************<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><b><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"> MM DIPOLE
[BERRY PHASE](A.U.)| </span><span style="font-size:8.0pt;font-family:"Lucida Console"">-5.474236 -7.277890 -24.581328<u></u><u></u></span></b></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE
[BERRY PHASE](Debye)|
-13.914119 -18.498550 -62.479498<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><b><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"> MM DIPOLE [BERRY
PHASE] DERIVATIVE(A.U.)| </span><span style="font-size:8.0pt;font-family:"Lucida Console"">-0.011981 -0.010334
0.009710<u></u><u></u></span></b></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console""><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> ENERGY| Total
FORCE_EVAL ( FIST ) energy (a.u.):
8772.964220420968559<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> Centre of mass
motion (COM):
x = -0.0000010184<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
y = 0.0000002238<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
z = -0.0000015332<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *******************************************************<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *** ERROR in
siep_Phi_ij (MODULE manybody_siepmann) ***<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *******************************************************<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *** Error in
Siepmann-Sprik part: too many H atoms ***<u></u><u></u></b></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *** Program
stopped at line number 338 of MODULE manybody_siepmann ***</b><u></u><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b><br></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><font size="2"><span style="font-family:'Lucida Console'" lang="EN-US">or sometimes (</span><span lang="EN-US">file <b><u>Pt111_1586H2O_Test2</u></b></span></font><span style="font-family:'Lucida Console'" lang="EN-US"><font size="2">) terminated as</font><span style="font-size:8pt"><u></u><u></u></span></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u> <u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>Centre of mass motion (COM): x = -0.0000000528<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
y = -0.0000000109<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
z = -0.0000001862<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE [BERRY
PHASE](A.U.)|
-6.717544 2.821496 -3.847367<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE
[BERRY PHASE](Debye)|
-17.074293 7.171526 -9.779030<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE
[BERRY PHASE] DERIVATIVE(A.U.)|
-0.002798 -0.008723 0.005970<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> ENERGY| Total
FORCE_EVAL ( FIST ) energy (a.u.):
-31.096110069961611<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> Centre of mass
motion (COM):
x = -0.0000000505<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
y = -0.0000000105<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> z = -0.0000001776<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE
[BERRY PHASE](A.U.)|
-6.729504 2.834566 -3.852281<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE
[BERRY PHASE](Debye)|
-17.104691 7.204748 -9.791520<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> MM DIPOLE
[BERRY PHASE] DERIVATIVE(A.U.)| -0.002638 -0.008331
0.005670<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> ENERGY| Total
FORCE_EVAL ( FIST ) energy (a.u.):
96420902.412601232528687<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><b> </b><u></u></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> **********************************************************************<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> **********************************************************************<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *** 22:43:43
ERRORL3 in thermostat_utils:communication_thermo_low1 ***<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b> *** processor
0 :: err=-300 condition FAILED at line
1877 ***<u></u><u></u></b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><b><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"> </span><span style="font-size:8.0pt;font-family:"Lucida Console"">**********************************************************************<u></u><u></u></span></b></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><b>
</b></span></p><p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:10.0pt;font-family:"Lucida Console""><b> **********************************************************************</b></span><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u><u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal" style="margin-bottom:0.0001pt"><span style="font-size:8.0pt;font-family:"Lucida Console"" lang="EN-US"><u></u> <u></u></span></p><p class="MsoNormal" style="text-align:justify"><span lang="EN-US">I’ve varied the basic parameters
to solve the problem: time steps, temperature, type and parameters of thermostat,
</span><span style="font-size:10.0pt;line-height:115%;font-family:"Lucida Console"" lang="EN-US">Pt-O
potential in &genpot section and etc. But all manipulation doesn’t give anything.
Anyway, each task has a jump of energy at last iteration. A network also doesn’t
have any information.<u></u><u></u></span></p>
<p class="MsoNormal" style="text-align:justify"><span style="font-size:10.0pt;line-height:115%;font-family:"Lucida Console"" lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal" style="text-align:justify"><span style="font-size:10.0pt;line-height:115%;font-family:"Lucida Console"" lang="EN-US">Can anyone
please help me to solve this problem? Maybe someone work with Siepmann
potential?<span class="HOEnZb"><font color="#888888"><u></u><u></u></font></span></span></p></div><span class="HOEnZb"><font color="#888888">
<p></p>
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