<div dir="ltr">CP2K users,<div>I am obtaining very unexpected results from the COLVARS of the METADYNAMICS module. I had to piece together an input from the mail list and what I could learn from the manual, but I think I have all of the relevant additional input required for METADYNAMICS. Please tell me if I'm wrong. </div><div><br></div><div>I am obtaining very large COLVAR distances for variable 1 and entirely too small ones for variable 2. COLVAR 1 should be around 1.7A, but it ranges from 7.99 to 11.17 (Bohr?). COLVAR 2 should be about 1.5A, but it appears to vary from 3.621-6.252 (Bohr?). (Coordination, COLVAR 3, varies from -0.2 to 0.3, but I have not idea what it should be). The range of distances were reported in by the fes.sopt code which I ran with the options:<font face="arial, sans-serif" size="2"><div class="prettyprint" style="background-color: rgb(250, 250, 250); border: 1px solid rgb(187, 187, 187); word-wrap: break-word;"><code class="prettyprint"><div class="subprettyprint"><span style="color: #000;" class="styled-by-prettify">fes</span><span style="color: #660;" class="styled-by-prettify">.</span><span style="color: #000;" class="styled-by-prettify">sopt </span><span style="color: #660;" class="styled-by-prettify">-</span><span style="color: #000;" class="styled-by-prettify">ndim </span><span style="color: #066;" class="styled-by-prettify">3</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #660;" class="styled-by-prettify">-</span><span style="color: #000;" class="styled-by-prettify">find</span><span style="color: #660;" class="styled-by-prettify">-</span><span style="color: #000;" class="styled-by-prettify">minima </span><span style="color: #660;" class="styled-by-prettify">-</span><span style="color: #000;" class="styled-by-prettify">cp2k </span><span style="color: #660;" class="styled-by-prettify">-</span><span style="color: #000;" class="styled-by-prettify">file xxx</span><span style="color: #660;" class="styled-by-prettify">.</span><span style="color: #000;" class="styled-by-prettify">restart</span></div></code></div></font></div><div><br></div><div>I am also interested to learn if METADYNAMICS can be restarted. There are a lot of unexplained keywords that have something to do with restarting METADYNAMICS in the manual, but I don't know if we have to use them. </div><div><br></div><div>I have included the relevant section from the &MOTION input section and the &FORCE_EVAL/&SUBSYS input section below:<br><div><br><div class="prettyprint" style="background-color: rgb(250, 250, 250); border: 1px solid rgb(187, 187, 187); word-wrap: break-word;"><code class="prettyprint"><div class="subprettyprint"><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">MOTION  <br>   </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">FREE_ENERGY<br><br>   METHOD METADYN <br><br>   </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">METADYN <br><br>    DO_HILLS </span><span style="color: #660;" class="styled-by-prettify">.</span><span style="color: #000;" class="styled-by-prettify">TRUE</span><span style="color: #660;" class="styled-by-prettify">.</span><span style="color: #000;" class="styled-by-prettify"> <br><br>    WW </span><span style="color: #660;" class="styled-by-prettify">[</span><span style="color: #000;" class="styled-by-prettify">hartree</span><span style="color: #660;" class="styled-by-prettify">]</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #066;" class="styled-by-prettify">1.0E-3</span><span style="color: #000;" class="styled-by-prettify"> <br><br>    NT_HILLS </span><span style="color: #066;" class="styled-by-prettify">15</span><span style="color: #000;" class="styled-by-prettify"> <br><br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">METAVAR <br><br>     COLVAR </span><span style="color: #066;" class="styled-by-prettify">1</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     SCALE </span><span style="color: #066;" class="styled-by-prettify">0.08</span><span style="color: #000;" class="styled-by-prettify"> <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> METAVAR <br><br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">METAVAR <br><br>     COLVAR </span><span style="color: #066;" class="styled-by-prettify">2</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     SCALE </span><span style="color: #066;" class="styled-by-prettify">0.08</span><span style="color: #000;" class="styled-by-prettify"> <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> METAVAR <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">METAVAR <br><br>     COLVAR </span><span style="color: #066;" class="styled-by-prettify">3</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     SCALE </span><span style="color: #066;" class="styled-by-prettify">0.08</span><span style="color: #000;" class="styled-by-prettify"> <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> METAVAR <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">PRINT <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">COLVAR MEDIUM <br>      </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">EACH <br><br>        METADYNAMICS </span><span style="color: #066;" class="styled-by-prettify">1</span><span style="color: #000;" class="styled-by-prettify"> <br><br>        MD </span><span style="color: #066;" class="styled-by-prettify">15</span><span style="color: #000;" class="styled-by-prettify"> <br><br>      </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> EACH <br><br>      FILENAME xxx_colvar <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> COLVAR <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> PRINT <br><br>   </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> METADYN <br><br>   </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">FREE_ENERGY_INFO MEDIUM <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">EACH <br><br>       METADYNAMICS </span><span style="color: #066;" class="styled-by-prettify">1</span><span style="color: #000;" class="styled-by-prettify"> <br><br>       MD </span><span style="color: #066;" class="styled-by-prettify">15</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> EACH <br><br>     FILENAME xxx_freeenergy <br><br>   </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> FREE_ENERGY_INFO <br><br>  </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> FREE_ENERGY<br><br></span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> MOTION<br><br></span></div></code></div><div>And the &SUBSYS section containing the COLVARS:</div><div><div class="prettyprint" style="background-color: rgb(250, 250, 250); border: 1px solid rgb(187, 187, 187); word-wrap: break-word;"><code class="prettyprint"><div class="subprettyprint"><span style="color: #000;" class="styled-by-prettify">  </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">SUBSYS<br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">CELL <br><br>      ABC </span><span style="color: #066;" class="styled-by-prettify">12.97658</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #066;" class="styled-by-prettify">12.90794</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #066;" class="styled-by-prettify">12.97688</span><span style="color: #000;" class="styled-by-prettify"> <br><br>      PERIODIC XYZ <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> CELL <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">COLVAR <br><br>     </span><span style="color: #660;" class="styled-by-prettify">!</span><span style="color: #000;" class="styled-by-prettify">P to F<br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">DISTANCE <br><br>      ATOMS </span><span style="color: #066;" class="styled-by-prettify">11</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #066;" class="styled-by-prettify">17</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> DISTANCE <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> COLVAR <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">COLVAR <br><br>     </span><span style="color: #660;" class="styled-by-prettify">!</span><span style="color: #000;" class="styled-by-prettify">P to O<br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">DISTANCE <br><br>      ATOMS </span><span style="color: #066;" class="styled-by-prettify">11</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #066;" class="styled-by-prettify">9</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> DISTANCE <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> COLVAR <br><br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">COLVAR <br><br>     </span><span style="color: #660;" class="styled-by-prettify">!</span><span style="color: #000;" class="styled-by-prettify">see </span><span style="color: #066;" class="styled-by-prettify">10.1021</span><span style="color: #660;" class="styled-by-prettify">/</span><span style="color: #000;" class="styled-by-prettify">jp301490k </span><span style="color: #008;" class="styled-by-prettify">for</span><span style="color: #000;" class="styled-by-prettify"> ND NN R0 parameter meaning <br><br>     </span><span style="color: #660;" class="styled-by-prettify">!</span><span style="color: #000;" class="styled-by-prettify"> P to O </span><span style="color: #008;" class="styled-by-prettify">in</span><span style="color: #000;" class="styled-by-prettify"> water <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #000;" class="styled-by-prettify">COORDINATION <br><br>      ND </span><span style="color: #066;" class="styled-by-prettify">12</span><span style="color: #000;" class="styled-by-prettify"> <br><br>      NN </span><span style="color: #066;" class="styled-by-prettify">6</span><span style="color: #000;" class="styled-by-prettify"> <br><br>      R0 </span><span style="color: #660;" class="styled-by-prettify">[</span><span style="color: #000;" class="styled-by-prettify">bohr</span><span style="color: #660;" class="styled-by-prettify">]</span><span style="color: #000;" class="styled-by-prettify"> </span><span style="color: #066;" class="styled-by-prettify">3.0</span><span style="color: #000;" class="styled-by-prettify"> <br><br>      KINDS_FROM P <br><br>      KINDS_TO </span><span style="color: #606;" class="styled-by-prettify">Ow</span><span style="color: #000;" class="styled-by-prettify"> <br><br>     </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> COORDINATION <br><br>    </span><span style="color: #660;" class="styled-by-prettify">&</span><span style="color: #008;" class="styled-by-prettify">END</span><span style="color: #000;" class="styled-by-prettify"> COLVAR<br><br></span></div></code></div><div><br><br></div><br></div></div></div></div>