<div dir="ltr">Dear Teo,<div> Yes, it stopped at 80th fs step. I wanted to know, what is the possible reason for stopping calculation at this step. For that I have given previous plots. I did not realized those were the fluctuations. Thank you once again for your reply. </div>
</div><div class="gmail_extra"><br clear="all"><div><div dir="ltr">Thank you<br><br>B.Satyanarayana, Ph. D<br>Molecular modeling lab<div>JNCASR<br>Bangalore</div></div></div>
<br><br><div class="gmail_quote">On Thu, Sep 26, 2013 at 12:01 PM, Teodoro Laino <span dir="ltr"><<a href="mailto:teodor...@gmail.com" target="_blank">teodor...@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word"><div>The plots show only fluctuations - are you expecting to see a straight line?</div><div><br></div><div>What does it mean that the job comes out ? did you ask only for 80 fs? or it stopped?</div>
<br><div><div><div class="h5"><div>On Sep 26, 2013, at 7:44 AM, Bonakala Satyanarayana <<a href="mailto:satyanaray...@gmail.com" target="_blank">satyanaray...@gmail.com</a>> wrote:</div><br></div></div>
<blockquote type="cite"><div><div class="h5"><div dir="ltr"><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Sep 26, 2013 at 10:59 AM, Teodoro Laino <span dir="ltr"><<a href="mailto:teodor...@gmail.com" target="_blank">teodor...@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">strange</blockquote></div>Dear Teo,</div><div class="gmail_extra"> Thank you for your reply. The temperature and energy are not converging during NVT simulation, furthermore they are increasing. As soon as my simulation enters into 80fs, job is coming out without any error. I thought increment in energy and temperature could be the possible error. <br>
<br><br clear="all"><div><div dir="ltr">Thank you<br><br>B.Satyanarayana, Ph. D<br>Molecular modeling lab<div>JNCASR<br>Bangalore</div></div></div>
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