<br>Sure. I also want to mention that this problem does not seem to be related to the FIST bug mentioned in April, since I don't see this problem using the inputs provided in that discussion thread. I truncated the output files after the first QM/MM energy evaluation.<div>
Isaiah</div><div><br></div><div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div><div><div class="h5"><div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><br>
<br>
Hi,<br>
<br>
can you please also post the output file?<br>
Thank you.<br>
<br>
Teo<br>
<br>
On May 18, 2011, at 8:25 PM, Isaiah Sumner wrote:<br>
<br>
<br>
<br>
> Hi,<br>
> I have been trying to run parallel QM/MM calculations and have run<br>
> into a problem. I get different energies depending on how many<br>
> processors I use. The energy differences are significant. For example,<br>
> using 24 procs on a Cray XE6, I get,<br>
<br>
> ENERGY| Total FORCE_EVAL ( FIST ) energy (a.u.):<br>
> 6.710514008036768<br>
> ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):<br>
> -64.534140477272018<br>
> ENERGY| Total FORCE_EVAL ( QMMM ) energy (a.u.):<br>
> -55.496751397737185<br>
<br>
> but 48 procs gives,<br>
<br>
> ENERGY| Total FORCE_EVAL ( FIST ) energy (a.u.):<br>
> 6.710514008036785<br>
> ENERGY| Total FORCE_EVAL ( QS ) energy (a.u.):<br>
> -64.482262744620684<br>
> ENERGY| Total FORCE_EVAL ( QMMM ) energy (a.u.):<br>
> -55.444873665085836<br>
<br>
> The energy difference always comes in at the QS calculation. And it<br>
> seems to only occur if I use electrostatic coupling. This error<br>
> persists over different machines with different architectures and<br>
> compilers. Is this a known problem or have I made a mistake somewhere?<br>
<br>
> Thanks,<br>
> Isaiah<br>
<br>
> My input is the one given by Pauwels Ewald in this forum as an<br>
> example input. I've replicated the input below.<br>
<br>
> &FORCE_EVAL<br>
> METHOD QMMM<br>
> &DFT<br>
> BASIS_SET_FILE_NAME GTH_BASIS_SETS<br>
> POTENTIAL_FILE_NAME GTH_POTENTIALS<br>
> &MGRID<br>
> COMMENSURATE<br>
> CUTOFF 280<br>
> &END MGRID<br>
> &QS<br>
> METHOD GPW<br>
> EXTRAPOLATION PS<br>
> EXTRAPOLATION_ORDER 2<br>
> &END QS<br>
> &SCF<br>
> EPS_SCF 5.0E-7<br>
> MAX_SCF 20<br>
> SCF_GUESS RESTART<br>
> &OUTER_SCF<br>
> EPS_SCF 5.0E-7<br>
> MAX_SCF 20<br>
> &END<br>
> &OT<br>
> MINIMIZER DIIS<br>
> PRECONDITIONER FULL_ALL<br>
> STEPSIZE 0.10<br>
> &END OT<br>
> &END SCF<br>
> &XC<br>
> &XC_FUNCTIONAL BLYP<br>
> &END XC_FUNCTIONAL<br>
> &END XC<br>
> &END DFT<br>
> &MM<br>
> &FORCEFIELD<br>
> PARMTYPE CHM<br>
> PARM_FILE_NAME par_all27_prot_na.prm<br>
> EI_SCALE14 1.0<br>
> VDW_SCALE14 1.0<br>
> &SPLINE<br>
> EMAX_SPLINE 1.0<br>
> RCUT_NB 10.0<br>
> &END SPLINE<br>
> &END FORCEFIELD<br>
> &NEIGHBOR_LISTS<br>
> GEO_CHECK F<br>
> &END NEIGHBOR_LISTS<br>
> &POISSON<br>
> &EWALD<br>
> EWALD_TYPE spme<br>
> ALPHA .4<br>
> GMAX 27<br>
> &END EWALD<br>
> &END POISSON<br>
> &END MM<br>
> &SUBSYS<br>
> &CELL<br>
> ABC 20.0 20.0 20.0<br>
> &END CELL<br>
> &TOPOLOGY<br>
> CONN_FILE TAwater.psf<br>
> CONNECTIVITY PSF<br>
> COORD_FILE_NAME TAwater.pdb<br>
> COORD_FILE_FORMAT PDB<br>
> &END TOPOLOGY<br>
> &KIND Cqm<br>
> ELEMENT C<br>
> BASIS_SET DZVP-GTH<br>
> POTENTIAL GTH-BLYP-q4<br>
> &END KIND<br>
> &KIND Oqm<br>
> ELEMENT O<br>
> BASIS_SET DZVP-GTH<br>
> POTENTIAL GTH-BLYP-q6<br>
> &END KIND<br>
> &KIND Nqm<br>
> ELEMENT N<br>
> BASIS_SET DZVP-GTH<br>
> POTENTIAL GTH-BLYP-q5<br>
> &END KIND<br>
> &KIND Hqm<br>
> ELEMENT H<br>
> BASIS_SET DZVP-GTH<br>
> POTENTIAL GTH-BLYP-q1<br>
> &END KIND<br>
> &KIND H_LINK<br>
> ELEMENT H<br>
> BASIS_SET DZVP-GTH<br>
> POTENTIAL GTH-BLYP-q1<br>
> &END KIND<br>
> &END SUBSYS<br>
> &QMMM<br>
> &CELL<br>
> ABC 10.0 10.0 10.0<br>
> &END CELL<br>
> ECOUPL GAUSS<br>
> NOCOMPATIBILITY<br>
> USE_GEEP_LIB 12<br>
> NOCENTER0 FALSE<br>
> NOCENTER TRUE<br>
> &QM_KIND Cqm<br>
> MM_INDEX 15 17 21<br>
> &END QM_KIND<br>
> &QM_KIND Oqm<br>
> MM_INDEX 12 22<br>
> &END QM_KIND<br>
> &QM_KIND Nqm<br>
> MM_INDEX 13<br>
> &END QM_KIND<br>
> &QM_KIND Hqm<br>
> MM_INDEX 14 16 18 19 20<br>
> &END QM_KIND<br>
> &LINK<br>
> QM_INDEX 13<br>
> QM_KIND H<br>
> MM_INDEX 11<br>
> LINK_TYPE IMOMM<br>
> ALPHA_IMOMM 1.50<br>
> &END LINK<br>
> &LINK<br>
> QM_INDEX 21<br>
> QM_KIND H<br>
> MM_INDEX 26<br>
> LINK_TYPE IMOMM<br>
> ALPHA_IMOMM 1.50<br>
> &END LINK<br>
> &PERIODIC<br>
> GMAX .1<br>
> &MULTIPOLE<br>
> RCUT 10.0<br>
> &END MULTIPOLE<br>
> &END PERIODIC<br>
> &PRINT<br>
> &QMMM_LINK_INFO<br>
> &END QMMM_LINK_INFO<br>
> &POTENTIAL<br>
> &END POTENTIAL<br>
> &END PRINT<br>
> &END QMMM<br>
> &END FORCE_EVAL<br>
> &GLOBAL<br>
> PREFERRED_FFT_LIBRARY FFTSG<br>
> EXTENDED_FFT_LENGTHS T<br>
> PROJECT TA<br>
> RUN_TYPE GEO_OPT<br>
> PRINT_LEVEL LOW<br>
> &END GLOBAL<br>
> &MOTION<br>
> &GEO_OPT<br>
> OPTIMIZER LBFGS<br>
> MAX_ITER 4000<br>
> &END GEO_OPT<br>
> &END MOTION<br>
<br>
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</blockquote></div><br></div>