Dear Toon,<br>Nice to get your reply. I am tried to simulation using rigid water using amber force field and PDB file. In input file, what kind of keyword will be suitable in the place of MOLNAME. I am tried different ways, but every time I am getting error. Could you reply me suitable keywords, it will be great help for me.<br>
Have a nice day,<br>Thanks,<br>Maiti<br><br><br><br><br><div class="gmail_quote">On Fri, Nov 5, 2010 at 5:07 AM, Toon Verstraelen <span dir="ltr"><<a href="mailto:Toon.Ver...@ugent.be">Toon.Ver...@ugent.be</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi,<br>
<br>
Would someone care to take a look at (and possibly commit) the attached patch?<br>
<br>
I always have troubles with the mode selective regression tests when coding in Fist. The output seems to be very sensitive to numerical changes.<br>
<br>
I tried to understand a bit how the mode selective tests work, and noticed that the MS_RESTART file is always written by these tests. It is used by some of the other tests. The file name does not include a project name or anything. Just to reduce confusion, the attached patch adds a PRINT%MS_RESTART section to control this output and introduces a proper file name. The related tests are also updated in the patch.<br>
<br>
cheers,<br>
<br>
Toon<br>
<br>
-- <br>
Dr. ir. Toon Verstraelen<br>
Center for Molecular Modeling<br>
Ghent University<br>
Technologiepark 903,<br>
B9052 Zwijnaarde<br>
Belgium<br>
Tel: +32 9 264 65 56<br>
E-mail: Toon.Ver...@UGent.be<br>
<a href="http://molmod.UGent.be/" target="_blank">http://molmod.UGent.be/</a><br>
<a href="http://molmod.UGent.be/code/" target="_blank">http://molmod.UGent.be/code/</a><br><font color="#888888">
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