[CP2K-user] [CP2K:22351] Re: cp2k 2026.2 compiling error
yw zhang
phyzyw at gmail.com
Thu Jul 30 03:51:53 UTC 2026
I dont't have such an issue if I install the cp2k 2025.2 version:
==================== Installing LIBINT ====================
wget --quiet
https://www.cp2k.org/static/downloads/libint-v2.6.0-cp2k-lmax-5.tgz -O
libint-v2.6.0-cp2k-lmax-5.tgz
libint-v2.6.0-cp2k-lmax-5.tgz: OK
Checksum of libint-v2.6.0-cp2k-lmax-5.tgz Ok
Installing from scratch into
/project/angstrom/ywzhang/apps/cp2k/cp2k-2025.2/tools/toolchain/install/libint-v2.6.0-cp2k-lmax-5
Step libint took 683.00 seconds.
The liblnt can be installed successfully without the memory error.
yw zhang <phyzyw at gmail.com> 于2026年7月30日周四 11:21写道:
> Hello, everyone,
>
> I am compiling the cp2k 2026.2 version using toolchain with cmake in my
> cluster. I use the following script:
> source /opt/shared/.spack-edge/dist/bin/setup-env.sh -y
> module load intel-oneapi-compilers/2023.2.4-raos663
> module load intel-oneapi-mpi/2021.14.2-x86_64_v4-whckjok
> module load cmake/3.31.6-npbmige
>
> export CC=mpiicc
> export CXX=mpiicpc
> export FC=mpiifort
>
> ./install_cp2k_toolchain.sh \
> --with-intel=system \
> --mpi-mode=intelmpi \
> --with-cmake=system \
> --with-plumed=install \
> --with-libint=install \
> --with-elpa=install \
> --with-libxsmm=install \
> --with-libxc=install \
> --with-fftw=install \
> --with-openblas=install \
> --with-scalapack=install \
> --with-cosma=install \
> --with-sirius=install \
> --with-libvdwxc=install \
> --with-spglib=install \
> --with-hdf5=install \
> --with-libtorch=yes \
>
> But I always met the following error information in libin:
> [ 99%] Built target int-obj
> [ 99%] Linking CXX static library libint2.a
> [ 99%] Built target int-static
> make[2]: *** [CMakeFiles/libint_f.dir/build.make:117:
> CMakeFiles/libint_f.dir/depend] Killed
> make[1]: *** [CMakeFiles/Makefile2:156: CMakeFiles/libint_f.dir/all] Error
> 2
> make: *** [Makefile:136: all] Error 2
> slurmstepd: error: Detected 1 oom-kill event(s) in StepId=1673835.batch.
> Some of your processes may have been killed by the cgroup out-of-memory
> handler.
>
>
> I have applied a maximum memory 180G. But it's still big enough. I check
> the memory usage:
> JobID State ExitCode DerivedExitCode ReqMem MaxRSS
> Elapsed Timelimit
> ------------ ---------- -------- --------------- ---------- ----------
> ---------- ----------
> 1673835 OUT_OF_ME+ 0:125 0:0 191904M
> 01:40:42 1-00:00:00
> 1673835.bat+ OUT_OF_ME+ 0:125 181350916K
> 01:40:42
>
>
> I would appreciate it very much if any help can be offered.
>
> Best,
> Yao-Wen
>
>
>
--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+unsubscribe at googlegroups.com.
To view this discussion visit https://groups.google.com/d/msgid/cp2k/CAFRQposJUtw35_PsR_LTd21KUFcotFZAH5_Q4SGGLqh2U01HVQ%40mail.gmail.com.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20260730/1c34f4cd/attachment.htm>
More information about the CP2K-user
mailing list