[CP2K-user] [CP2K:21175] energy jumps during MD trajectory with implicit solvation
Sergio Tavares
sergiortf at gmail.com
Wed Feb 19 19:27:58 UTC 2025
Hi
My name is Sergio Tavares from UFRJ (Federal University of Rio de Janeiro).
I am running a calculation for a molecule in a dielectric cavity
(chloroform). I am observing some weird jumps for the potential energy of
the molecule (especially for the polarization energy. The alpha+gamma, beta
are from this work: Generalized molecular solvation in non-aqueous
solutions by a single parameter
implicit solvation scheme.
So far I tested three timestep values (1 fs, 0.8 fs and 0.5 fs). The energy
jumps still persist (figure in attachment). Furthermore, as I vary the
simulation box, a large jump occurs for some lengths (figure in attachment).
Here is the input:
&FORCE_EVAL
METHOD QS
&DFT
CHARGE 0
MULTIPLICITY 1
BASIS_SET_FILE_NAME /home/sergio/Desktop/pseudopotenciais/BASIS_SET_CP2K
POTENTIAL_FILE_NAME
/home/sergio/Desktop/pseudopotenciais/PSEUDOTENTIAL_CP2K
WFN_RESTART_FILE_NAME 20-deoxyphorbol_1fs
&QS
METHOD GPW
&END QS
&XC
&XC_FUNCTIONAL PBE
&END XC_FUNCTIONAL
&VDW_POTENTIAL
POTENTIAL_TYPE PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD3(BJ)
PARAMETER_FILE_NAME /home/sergio/Desktop/pseudopotenciais/dftd3.dat
REFERENCE_FUNCTIONAL PBE
CALCULATE_C9_TERM T
&END PAIR_POTENTIAL
&END VDW_POTENTIAL
&END XC
&SCCS ON
ALPHA [N*m^-1] 5.0
BETA [GPa] -0.5
DELTA_RHO 2.0E-5
DERIVATIVE_METHOD cd7
EPS_SCCS 1.0E-7
GAMMA [mN/m] 32.7
EPS_SCF 0.01
MAX_ITER 800
METHOD ANDREUSSI
MIXING 0.6
RELATIVE_PERMITTIVITY 4.81
&ANDREUSSI
RHO_MAX 0.001360
RHO_MIN 0.000184
&END ANDREUSSI
&END SCCS
&MGRID
CUTOFF 600
REL_CUTOFF 60
&END MGRID
&SCF
IGNORE_CONVERGENCE_FAILURE T
EPS_SCF 1.0E-5
MAX_SCF 10
SCF_GUESS RESTART
&OT T
MINIMIZER DIIS
PRECONDITIONER FULL_ALL
SAFE_DIIS T
&END OT
&OUTER_SCF T
EPS_SCF 1E-05
MAX_SCF 20
&END OUTER_SCF
&END SCF
&PRINT
&END PRINT
&POISSON
PERIODIC NONE
POISSON_SOLVER MULTIPOLE
&END POISSON
&END DFT
&SUBSYS
&CELL ! box size
ABC [angstrom] 25.00000 25.00000 25.00000
PERIODIC NONE
&END CELL
&TOPOLOGY
COORD_FILE_NAME 20-deoxyphorbol.xyz
COORD_FILE_FORMAT XYZ
&END TOPOLOGY
&KIND O
BASIS_SET TZVP-MOLOPT-PBE-GTH-q6
POTENTIAL GTH-PBE-q6
&END KIND
&KIND C
BASIS_SET TZVP-MOLOPT-PBE-GTH-q4
POTENTIAL GTH-PBE-q4
&END KIND
&KIND Cl
BASIS_SET TZVP-MOLOPT-PBE-GTH-q7
POTENTIAL GTH-PBE-q7
&END KIND
&KIND H
BASIS_SET TZVP-MOLOPT-PBE-GTH-q1
POTENTIAL GTH-PBE-q1
&END KIND
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PRINT_LEVEL MEDIUM !(or SILENT/LOW/HIGH/…)
PROJECT_NAME 20-deoxyphorbol_1fs
RUN_TYPE MD
WALLTIME 10000000000
&END GLOBAL
&MOTION
&MD
ENSEMBLE NVT
STEPS 2000
TEMPERATURE 300
TIMESTEP 1.0
&THERMOSTAT
TYPE NOSE
&NOSE
TIMECON 100
&END NOSE
&END THERMOSTAT
&END MD
&END MOTION
I would appreciate if anyone could give an insight about this problem.
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