[CP2K-user] [CP2K:22001] Help Required For Simulating Simple H20 Molecule Using Quickstep.
Satchith PS
ps.satchith at gmail.com
Thu Dec 18 13:07:57 UTC 2025
Hey all!
I'm a student starting to learn CP2K software. I don't have much background
in molecular dynamics simulation, have just started. From what I understood
so far, I created an input file "water_AIMD.inp" and a separate coordinate
file "water.xyz" as follows. They run but end abruptly. Can anyone please
find any mistakes in these files and help me?
*Input file:*
@SET PROJECT water_AIMD
@SET STEPS 20000
@SET TIMESTEP 0.5
@SET TEMP 300
&GLOBAL
PROJECT ${PROJECT}
RUN_TYPE MD
PRINT_LEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD QS
&DFT
BASIS_SET_FILE_NAME/BASIS_MOLOPT
POTENTIAL_FILE_NAME/GTH_POTENTIALS
&MGRID
CUTOFF 400
REL_CUTOFF 50
&END MGRID
&SCF
SCF_GUESS ATOMIC
EPS_SCF 1.0E-6
MAX_SCF 50
&OT
MINIMIZER DIIS
PRECONDITIONER FULL_SINGLE_INVERSE
&END OT
&END SCF
&XC
&XC_FUNCTIONAL PBE
&END XC_FUNCTIONAL
&END XC
&END DFT
&SUBSYS
&CELL
ABC 9.86 9.86 9.86
PERIODIC XYZ
&END CELL
&COORD
@INCLUDE water.xyz
&END COORD
&KIND O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE
&END KIND
&KIND H
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE
&END KIND
&END SUBSYS
&END FORCE_EVAL
&MOTION
&MD
ENSEMBLE NVT
STEPS ${STEPS}
TIMESTEP ${TIMESTEP}
TEMPERATURE ${TEMP}
&THERMOSTAT
TYPE NOSE
&NOSE
LENGTH 3
TIMECON 1000
&END NOSE
&END THERMOSTAT
&END MD
&PRINT
&TRAJECTORY
FORMAT XYZ
&EACH
MD 10
&END EACH
&END TRAJECTORY
&VELOCITIES
&EACH
MD 10
&END EACH
&END VELOCITIES
&RESTART
FILENAME ${PROJECT}
ADD_LAST NUMERIC
&EACH
MD 200
&END EACH
&END RESTART
&END PRINT
&END MOTION
*Coordinate file :*
96
32 water molecules, cubic box ~9.86 A
O 1.000000 1.000000 1.000000
H 1.957200 1.000000 1.000000
H 0.760000 1.926627 1.000000
O 3.000000 1.000000 1.000000
H 3.957200 1.000000 1.000000
H 2.760000 1.926627 1.000000
O 5.000000 1.000000 1.000000
H 5.957200 1.000000 1.000000
H 4.760000 1.926627 1.000000
O 7.000000 1.000000 1.000000
H 7.957200 1.000000 1.000000
H 6.760000 1.926627 1.000000
O 1.000000 3.000000 1.000000
H 1.957200 3.000000 1.000000
H 0.760000 3.926627 1.000000
O 3.000000 3.000000 1.000000
H 3.957200 3.000000 1.000000
H 2.760000 3.926627 1.000000
O 5.000000 3.000000 1.000000
H 5.957200 3.000000 1.000000
H 4.760000 3.926627 1.000000
O 7.000000 3.000000 1.000000
H 7.957200 3.000000 1.000000
H 6.760000 3.926627 1.000000
O 1.000000 5.000000 1.000000
H 1.957200 5.000000 1.000000
H 0.760000 5.926627 1.000000
O 3.000000 5.000000 1.000000
H 3.957200 5.000000 1.000000
H 2.760000 5.926627 1.000000
O 5.000000 5.000000 1.000000
H 5.957200 5.000000 1.000000
H 4.760000 5.926627 1.000000
O 7.000000 5.000000 1.000000
H 7.957200 5.000000 1.000000
H 6.760000 5.926627 1.000000
O 1.000000 7.000000 1.000000
H 1.957200 7.000000 1.000000
H 0.760000 7.926627 1.000000
O 3.000000 7.000000 1.000000
H 3.957200 7.000000 1.000000
H 2.760000 7.926627 1.000000
O 5.000000 7.000000 1.000000
H 5.957200 7.000000 1.000000
H 4.760000 7.926627 1.000000
O 7.000000 7.000000 1.000000
H 7.957200 7.000000 1.000000
H 6.760000 7.926627 1.000000
O 1.000000 1.000000 5.000000
H 1.957200 1.000000 5.000000
H 0.760000 1.926627 5.000000
O 3.000000 1.000000 5.000000
H 3.957200 1.000000 5.000000
H 2.760000 1.926627 5.000000
O 5.000000 1.000000 5.000000
H 5.957200 1.000000 5.000000
H 4.760000 1.926627 5.000000
O 7.000000 1.000000 5.000000
H 7.957200 1.000000 5.000000
H 6.760000 1.926627 5.000000
O 1.000000 3.000000 5.000000
H 1.957200 3.000000 5.000000
H 0.760000 3.926627 5.000000
O 3.000000 3.000000 5.000000
H 3.957200 3.000000 5.000000
H 2.760000 3.926627 5.000000
O 5.000000 3.000000 5.000000
H 5.957200 3.000000 5.000000
H 4.760000 3.926627 5.000000
O 7.000000 3.000000 5.000000
H 7.957200 3.000000 5.000000
H 6.760000 3.926627 5.000000
O 1.000000 5.000000 5.000000
H 1.957200 5.000000 5.000000
H 0.760000 5.926627 5.000000
O 3.000000 5.000000 5.000000
H 3.957200 5.000000 5.000000
H 2.760000 5.926627 5.000000
O 5.000000 5.000000 5.000000
H 5.957200 5.000000 5.000000
H 4.760000 5.926627 5.000000
O 7.000000 5.000000 5.000000
H 7.957200 5.000000 5.000000
H 6.760000 5.926627 5.000000
O 1.000000 7.000000 5.000000
H 1.957200 7.000000 5.000000
H 0.760000 7.926627 5.000000
O 3.000000 7.000000 5.000000
H 3.957200 7.000000 5.000000
H 2.760000 7.926627 5.000000
O 5.000000 7.000000 5.000000
H 5.957200 7.000000 5.000000
H 4.760000 7.926627 5.000000
O 7.000000 7.000000 5.000000
H 7.957200 7.000000 5.000000
H 6.760000 7.926627 5.000000
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