[CP2K-user] [CP2K:20709] complication issue with cp2kv2024.3

['Colin Hylton-Farrington' via cp2k]

1.git clone -b support/v2024.3 https://github.com/cp2k/cp2k.git cp2k

2. module load intel_mkl/18.0.5

3. ./install_cp2k_toolchain.sh --with-openmpi=system --with-mkl=system 
--with-elpa=no --with-sirius=no

4. cp /cp2k/tools/toolchain/install/arch/* cp2k/arch

5. source 
/projects/f_rcr78_1/PACKAGES/CP2Kv9/cp2k/tools/toolchain/install/setup

6. make -j 8 ARCH=local VERSION=psmp


It complies for a while and then this error gets thrown up:

/usr/bin/ld: Dwarf Error: found dwarf version '5', this reader only handles 
version 2, 3 and 4 information.

/cp2k/tools/toolchain/install/libvori-220621/lib/libvori.a(v_unitcell.cpp.o): 
In function `std::deque<int, std::allocator<int> 
>::_M_reallocate_map(unsigned long, bool)':

v_unitcell.cpp:(.text._ZNSt5dequeIiSaIiEE17_M_reallocate_mapEmb[_ZNSt5dequeIiSaIiEE17_M_reallocate_mapEmb]+0x177): 
undefined reference to `std::__throw_bad_array_new_length()'

/usr/bin/ld: Dwarf Error: found dwarf version '5', this reader only handles 
version 2, 3 and 4 information.

/cp2k/tools/toolchain/install/libvori-220621/lib/libvori.a(v_unitcell.cpp.o): 
In function `std::deque<int, std::allocator<int> 
>::_M_reallocate_map(unsigned long, bool)':

v_unitcell.cpp:(.text._ZNSt5dequeIiSaIiEE17_M_reallocate_mapEmb[_ZNSt5dequeIiSaIiEE17_M_reallocate_mapEmb]+0x177): 
undefined reference to `std::__throw_bad_array_new_length()'

/usr/bin/ld: Dwarf Error: found dwarf version '5', this reader only handles 
version 2, 3 and 4 information.

/cp2k/tools/toolchain/install/libvori-220621/lib/libvori.a(bqb_format.cpp.o): 
In function `CBQBFile::OpenListFile(_IO_FILE*)':

bqb_format.cpp:(.text+0x4137): undefined reference to 
`std::__throw_bad_array_new_length()'

bqb_format.cpp:(.text+0x4159): undefined reference to 
`std::__throw_bad_array_new_length()'

/usr/bin/ld: Dwarf Error: found dwarf version '5', this reader only handles 
version 2, 3 and 4 information.

cp2k/tools/toolchain/install/libvori-220621/lib/libvori.a(bqb_format.cpp.o): 
In function `CBQBFile::OpenListFile(_IO_FILE*)':

bqb_format.cpp:(.text+0x4137): undefined reference to 
`std::__throw_bad_array_new_length()'

bqb_format.cpp:(.text+0x4159): undefined reference to 
`std::__throw_bad_array_new_length()'

collect2: error: ld returned 1 exit status

make[3]: *** [/cp2k/exe/local/cp2k.ssmp] Error 1

make[3]: *** Waiting for unfinished jobs....

collect2: error: ld returned 1 exit status

make[3]: *** [/cp2k/exe/local/libcp2k_unittest.ssmp] Error 1

make[2]: *** [all] Error 2

make[1]: *** [ssmp] Error 2

make: *** [all] Error 2

 


This is being compiled on a local cluster x86_64 GNU/Linux

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