[CP2K-user] [CP2K:20016] Output file was overwritten by warnings

ma455...@gmail.com ma455173220 at gmail.com
Tue Mar 12 00:20:02 UTC 2024


Hi,

I've encountered situations where errors or warnings cause the entire 
output file to be overwritten (as attached). I'm curious about the cause of 
this and how to prevent it from happening.

Regards,
Hongyang

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 JOBID| JOBFS                                                 110619495.gadi-pbs

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1471, 1471) = 1.000000000000114
 The deviation from the expected value 1 is 1.141E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1471, 1471) = 1.000000000000129
 The deviation from the expected value 1 is 1.288E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1905, 1905) = 1.000000000000106
 The deviation from the expected value 1 is 1.059E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1687, 1687) = 1.000000000000107
 The deviation from the expected value 1 is 1.070E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1481, 1481) = 1.000000000000108
 The deviation from the expected value 1 is 1.079E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1432, 1432) = 1.000000000000115
 The deviation from the expected value 1 is 1.146E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (2017, 2017) = 1.000000000000105
 The deviation from the expected value 1 is 1.048E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1971, 1971) = 1.000000000000101
 The deviation from the expected value 1 is 1.006E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1718, 1718) = 1.000000000000106
 The deviation from the expected value 1 is 1.059E-13

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (2132, 2132) = 1.000000000000114
 The deviation from the expected value 1 is 1.141E-13
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1557, 1557) = 1.000000000000100
 The deviation from the expected value 1 is 1.001E-13

 *** WARNING in fm/cp_fm_diag.F:337 :: Check of matrix diagonalization ***
 *** failed in routine check_diag                                      ***

     1 Broy./Diag. 0.20E+00   35.8     0.06576023     -2903.1684802823 -2.90E+03

 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1554, 1554) = 1.000000000000104
 The deviation from the expected value 1 is 1.044E-13

 *** WARNING in fm/cp_fm_diag.F:337 :: Check of matrix diagonalization ***
 *** failed in routine check_diag                                      ***


 The eigenvectors returned by ELPA are not orthonormal
 Matrix element (1555, 1555) = 1.000000000000122
 The deviation from the expected value 1 is 1.217E-13

 *** WARNING in fm/cp_fm_diag.F:337 :: Check of matrix diagonalization ***
 *** failed in routine check_diag                                      ***



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