[CP2K-user] [CP2K:19964] Does the boundary setting affect the charge distribution under the electric field?
Evelyn Navarro
easauasqc at gmail.com
Fri Feb 23 13:03:31 UTC 2024
Dear all
I was studying the charge changes of two-dimensional piezoelectric
materials under electric fields, and found that when the boundary is set as
a period, the charge is actually concentrated in the middle of the
material, which is not understandable. But if you use aperiodic boundaries,
the charge will accumulate towards both ends of the material, which is
normal. I tried the electric field and the periodic electric field
respectively, and as long as the boundary is periodic, the charge will
gather in the middle, which is incomprehensible, and I want to know why.
What I want to study is periodic materials, and this periodic boundary is
unavoidable.
&GLOBAL
PROJECT 468-zhouqi-0.004d-xybianjie-2024
PRINT_LEVEL LOW
RUN_TYPE MD
&END GLOBAL
&FORCE_EVAL
METHOD Quickstep
&SUBSYS
&CELL
ABC 38.9946780817 32.5196269485 20.000
PERIODIC XY #Direction of applied PBC (geometry aspect)
&END CELL
&TOPOLOGY
COORD_FILE_FORMAT XYZ
COORD_FILE_NAME 468.xyz
&CENTER_COORDINATES #Centering the atoms in the box
&END
&END
# &VELOCITY #You can set initial atomic velocities in this section
# &END VELOCITY
&END SUBSYS
&DFT
# WFN_RESTART_FILE_NAME 400-RESTART.wfn
CHARGE 0 #Net charge
MULTIPLICITY 1 #Spin multiplicity
&EFIELD
INTENSITY 0.004
POLARISATION -1.00000 0.00000 0.00000
&END
&QS
EPS_DEFAULT 1E-10 #This is default. Set all EPS_xxx to values such
that the energy will be correct up to this value
EXTRAPOLATION ASPC #Extrapolation for wavefunction during e.g. MD.
ASPC is default, PS also be used
EXTRAPOLATION_ORDER 3 #Order for PS or ASPC extrapolation. 3 is
default
METHOD xTB
&xTB
CHECK_ATOMIC_CHARGES F #xTB calculation often crashes without
setting this to false
&PARAMETER
DISPERSION_PARAMETER_FILE dftd3.dat
PARAM_FILE_NAME xTB_parameters
&END PARAMETER
&END xTB
&END QS
&POISSON
PERIODIC XY #Direction(s) of PBC for calculating electrostatics
PSOLVER ANALYTIC #The way to solve Poisson equation
&END POISSON
&SCF
MAX_SCF 20 #Maximum number of steps of inner SCF
EPS_SCF 1.0E-05 #Convergence threshold of density matrix of inner SCF
# SCF_GUESS RESTART #Use wavefunction from WFN_RESTART_FILE_NAME file
as initial guess
&OT
PRECONDITIONER FULL_SINGLE_INVERSE
MINIMIZER DIIS #CG is worth to consider in difficult cases
LINESEARCH 2PNT #1D line search algorithm for CG. 2PNT is default,
3PNT is better but more costly. GOLD is best but very expensive
&END OT
&OUTER_SCF
MAX_SCF 20 #Maximum number of steps of outer SCF
EPS_SCF 1.0E-05 #Convergence threshold of outer SCF
&END OUTER_SCF
&PRINT
&RESTART OFF #Do not generate wfn file to suppress meaningless I/O
cost
&END RESTART
&END PRINT
&END SCF
&END DFT
&END FORCE_EVAL
&MOTION
&MD
ENSEMBLE NVT
STEPS 250000 #Number of steps to run
TIMESTEP 1.0 #Step size in fs. Decrease it properly for high
temperature simulation
TEMPERATURE 5 #Initial and maintained temperature (K)
&THERMOSTAT
TYPE NOSE
&END THERMOSTAT
&END MD
&CONSTRAINT
&FIXED_ATOMS #Set atoms to be fixed
COMPONENTS_TO_FIX XYZ #Which fractional components will be fixed, can
be X, Y, Z, XY, XZ, YZ, XYZ
LIST 357..468
&END FIXED_ATOMS
&END CONSTRAINT
&PRINT
&TRAJECTORY
&EACH
MD 1 #Output frequency of coordinate
&END EACH
FORMAT xyz
&END TRAJECTORY
&RESTART
BACKUP_COPIES 0 #Maximum number of backing up restart file, 0 means
never
&EACH
MD 100 #Frequency of updating last restart file. Default is 20
&END EACH
&END RESTART
&RESTART_HISTORY
&EACH
MD 1000 #How many steps a history .restart file is generated.
Default is 500
&END EACH
&END RESTART_HISTORY
&END PRINT
&END MOTION
Thanks
Evelyn Navarro
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