[CP2K-user] [CP2K:18778] how to treat water atoms (Wat) in cif files of minerals

ABDELILAH AYAD abdelilah.ayad at ump.ac.ma
Mon May 8 15:10:52 UTC 2023


BONJOUR
EST CE QUE TU AS TROUVER DES RESULTAS

Le ven. 28 avr. 2023 à 03:37, DMITRII Drugov <dresearcher1991 at gmail.com> a
écrit :

> Dear CP2K community,
>
> I am trying to simulate the mineral/water interface and there are some Wat
> clusters files in the crystal of the mineral (inside the solid). I wonder
> how should I treat them in CP2K?
> Should I manually create H2O molecules in Avogardo to substitute all Wat
> atoms or there is a better way to process to simulation?
>
> Here I attached a screenshot from the Vesta and cif file for the slab.
>
> I would really appreciate your expert opinion on this matter.
>
> Best regards,
> Dmitrii
>
> [image: Screenshot 2023-04-28 at 12.30.26 pm.png]
>
>
>
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