[CP2K-user] [CP2K:18915] Regarding using Plumed as an external engine for OPES Metadynamics in Cp2k
Anmol
anmoljindal0 at gmail.com
Sun Jun 11 17:41:49 UTC 2023
Dear users of CP2K,
I am attempting to run OPES Metadynamics in CP2K, using PLUMED as an
external driver. I am encountering two problems with my setup:
Issue with temperature specification in PLUMED input file:
===================================
plumed_inupt_file
UNITS LENGTH=A ENERGY=kcal/mol TIME=fs
cv1: DISTANCE ATOMS=4,13
cv2: DISTANCE ATOMS=1,16
opes: OPES_METAD_EXPLORE ARG=cv1,cv2 PACE=20 BARRIER=50 *TEMP=300*
uwall: UPPER_WALLS ARG=cv1,cv2 AT=3.0,3.0 KAPPA=40,40
PRINT STRIDE=20 FILE=COLVAR ARG=*
=======================================
When I omit the temperature specification in my PLUMED input file, I
receive the following error message:
PLUMED:
################################################################################
PLUMED:
PLUMED:
PLUMED: +++ PLUMED error
PLUMED: +++ at OPESmetad.cpp:379, function
PLMD::opes::OPESmetad<mode>::OPESmetad(const PLMD::ActionOptions&) [with
mode = PLMD::opes::exploration]
PLUMED: +++ assertion failed: kbt_>0
PLUMED: +++ message follows +++
PLUMED: your MD engine does not pass the temperature to plumed, you must
specify it using TEMP
PLUMED:
PLUMED:
################################################################################
Issue with COLVAR file generation:
Interestingly, when I include the TEMP keyword in the PLUMED input file,
the program runs without any errors, but it still doesn't write anything to
the COLVAR file.
below is my cp2k input file
=================
&GLOBAL
PROJECT aimtd
RUN_TYPE MD
PRINT_LEVEL MEDIUM
&END GLOBAL
!&EXT_RESTART
!RESTART_FILE_NAME aimd-nvt-1.restart
!&END
&MOTION
&GEO_OPT
OPTIMIZER LBFGS
MAX_ITER 100
MAX_FORCE 1.0E-03
RMS_DR 1.0E-03
RMS_FORCE 1.0E-03
MAX_DR 1.0E-03
&LBFGS
&END
&END
&MD
ENSEMBLE NVT
TEMPERATURE 300
TIMESTEP 0.5
STEPS 10000
&THERMOSTAT
TYPE CSVR
&CSVR
TIMECON 1
&END CSVR
&END THERMOSTAT
&END MD
&PRINT
&TRAJECTORY
ADD_LAST NUMERIC
FORMAT PDB
&EACH
MD 1
&END EACH
&END TRAJECTORY
&RESTART
ADD_LAST NUMERIC
&EACH
MD 1
&END EACH
&END RESTART
&RESTART_HISTORY ON
&END
&FORCES
FILENAME forces_nvt
&EACH
MD 1
&END EACH
&END FORCES
&STRESS
FILENAME stress_nvt
&EACH
MD 1
&END EACH
&END STRESS
&END PRINT
&FREE_ENERGY
&METADYN
USE_PLUMED .TRUE.
PLUMED_INPUT_FILE metad_plumed.dat
&END METADYN
&END FREE_ENERGY
&END MOTION
&FORCE_EVAL
METHOD Quickstep
&DFT
BASIS_SET_FILE_NAME GTH_BASIS_SET
POTENTIAL_FILE_NAME POTENTIAL
&QS
EPS_DEFAULT 1.0E-07
&END QS
&MGRID
CUTOFF 400
NGRIDS 4
REL_CUTOFF 70
&END MGRID
&SCF
SCF_GUESS ATOMIC
EPS_SCF 1.0E-07
MAX_SCF 20
&OT ON
MINIMIZER DIIS
PRECONDITIONER FULL_ALL
&END OT
&OUTER_SCF
MAX_SCF 100
&END OUTER_SCF
&END SCF
&XC
&XC_FUNCTIONAL
&MGGA_XC_B97M_V
&END MGGA_XC_B97M_V
&END XC_FUNCTIONAL
&VDW_POTENTIAL
&NON_LOCAL
TYPE RVV10
&END NON_LOCAL
&END VDW_POTENTIAL
&END XC
&END DFT
&SUBSYS
&CELL
ABC 11.76 11.76 11.76
&END CELL
&TOPOLOGY
COORD_FILE_NAME new_sys.xyz
COORD_FILE_FORMAT XYZ
&END TOPOLOGY
&KIND C
ELEMENT C
BASIS_SET TZV2P-GTH-q4
POTENTIAL GTH-BLYP-q4
&END KIND
&KIND H
ELEMENT H
BASIS_SET TZV2P-GTH-q1
POTENTIAL GTH-BLYP-q1
&END KIND
&KIND O
ELEMENT O
BASIS_SET TZV2P-GTH-q6
POTENTIAL GTH-BLYP-q6
&END KIND
&END SUBSYS
&END FORCE_EVAL
==========================
How to solve these two errors?
Regards
Anmol
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