[CP2K-user] [CP2K:18406] Re: detecting nucleophilic attack plausibility
Grzegorz Wieczorek
wieczorek.grzegorz at gmail.com
Thu Feb 2 15:16:01 UTC 2023
Sorry - slight correction. MOs are also printed out.
On Thursday, February 2, 2023 at 3:36:25 PM UTC+1 Grzegorz Wieczorek wrote:
> And the coordinates...
>
> On Thursday, February 2, 2023 at 3:27:30 PM UTC+1 Grzegorz Wieczorek wrote:
>
>> Hello,
>> I'm desperately trying to force cp2k to produce some output that I could
>> later use in estimation of plausible nucleophilic attack "spots". I use the
>> gromacs-cp2k interface (FORCE_EVAL, no MOTION section etc.), but since
>> inputs for cp2k can be used simply in cp2k :).
>> I am able to generate cubes, but rather than that I would like to use
>> some other output, from which Multiwfn could calculate laplacian of
>> electronic density, or use other fancy methods. Despite the multiple
>> outputs requested, only the FORCE_EVAL->DFT->PRINT->BASIS_SET_FILE actually
>> produces something (just a copy of basis functions used... no joy). The
>> stuff in ATOM section is completely mute. Besides, for my protein+ligand
>> system only OT seems to work reasonably fast, which also limits the number
>> of options. I definitely must be doing something wrong. Since the produced
>> .wfn file is not readable by any program but cp2k, I'm out of ideas how to
>> gtd.
>> If any of you could give me even a slightest push into right direction, I
>> would be very grateful!
>> Best regards,
>> g
>>
>
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