[CP2K-user] [CP2K:18403] detecting nucleophilic attack plausibility
Grzegorz Wieczorek
wieczorek.grzegorz at gmail.com
Thu Feb 2 14:27:30 UTC 2023
Hello,
I'm desperately trying to force cp2k to produce some output that I could
later use in estimation of plausible nucleophilic attack "spots". I use the
gromacs-cp2k interface (FORCE_EVAL, no MOTION section etc.), but since
inputs for cp2k can be used simply in cp2k :).
I am able to generate cubes, but rather than that I would like to use some
other output, from which Multiwfn could calculate laplacian of electronic
density, or use other fancy methods. Despite the multiple outputs
requested, only the FORCE_EVAL->DFT->PRINT->BASIS_SET_FILE actually
produces something (just a copy of basis functions used... no joy). The
stuff in ATOM section is completely mute. Besides, for my protein+ligand
system only OT seems to work reasonably fast, which also limits the number
of options. I definitely must be doing something wrong. Since the produced
.wfn file is not readable by any program but cp2k, I'm out of ideas how to
gtd.
If any of you could give me even a slightest push into right direction, I
would be very grateful!
Best regards,
g
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