[CP2K-user] [CP2K:18258] Re: TS Dimer method gives unphysical results
DMT
dobromirak at gmail.com
Mon Dec 26 14:15:48 UTC 2022
Also tried the following settings:
&MOTION
&GEO_OPT
TYPE TRANSITION_STATE
OPTIMIZER CG
MAX_ITER 2000
RMS_DR 0.10E-04 !DEF 1.5E-3
MAX_DR 0.30E-04 !DEF 3.0E-3
RMS_FORCE 0.10E-04 !DEF 3.0E-4
MAX_FORCE 0.30E-04 !DEF 4.5E-4
&CG
MAX_STEEP_STEPS 0
&LINE_SEARCH
TYPE 2PNT !WORKS WITH
CG
&2PNT
MAX_ALLOWED_STEP 0.20 !DEF 2.5E-1
&END 2PNT
&END LINE_SEARCH
&END CG
&TRANSITION_STATE
METHOD DIMER
&DIMER
DR 1.0E-2 !DEF 1.0E-2
ANGLE_TOLERANCE 2.0 !DEFAULT
8.72664626E-02
INTERPOLATE_GRADIENT T !DEFAULT T
&ROT_OPT
OPTIMIZER CG
&CG
MAX_STEEP_STEPS 0
&LINE_SEARCH
TYPE 2PNT !WORKS WITH CG
&2PNT
MAX_ALLOWED_STEP 1.0E-1 !DEF
2.5E-1
&END 2PNT
&END LINE_SEARCH
&END CG
&END ROT_OPT
&END DIMER
&END TRANSITION_STATE
&END GEO_OPT
&END MOTION
and nothing changed.
On Monday, December 26, 2022 at 1:15:50 AM UTC+2 DMT wrote:
> and files from the second reaction
>
> On Monday, December 26, 2022 at 1:14:34 AM UTC+2 DMT wrote:
>
>> Hello,
>>
>> I tried to use the Dimer method of optimizing TS and I get unphysical
>> results.
>>
>> I used this google group to find different input files and read about the
>> struggles to overcome and used the provided input settings of successful
>> runs.
>>
>> In both cases (files attached include input, required .xyz and output
>> .xyz from the optimization) Dimer drives the structures into having
>> impossibly short bonds, until the SCF does not even want to converge (and
>> it would be obviously impossible). It literally tries to merge some atoms
>> in both cases. I use the &DIMER_VECTOR to input the XYZ displacements from
>> a VIBRATIONAL_ANALYSIS job for the Reaction Coordinate that I am interested
>> in, using the guessed near-TS geometries. Without the DIMER_VECTOR the
>> method always chooses a wrong Reaction path. In both cases the TS geometry
>> I start with is very simple to provide, in fact I have found both TS with
>> other software, it is just very important for me to try simple systems in
>> cp2k before I move to actual research.
>>
>> One of the reactions is substitution in which the N LP from NH3 attacks
>> the C of CH3Cl and pushes the Cl away to form a quaternary ammonium cation
>> with the Cl- around. The other reaction is monomolecular - a keto-O taking
>> a H from a nearby amino group into an alcohol-imin as a Product.
>>
>> I have already tried higher values for EPS_DEFAULT (1.0E-13) and EPS_SCF
>> (1.0E-7), and nothing changes.
>>
>> I feel like the Dimer simply doesn't know where to stop with increasing
>> the Energy. Perhaps the choice of DFT (PBE) and basis (DZVP-MOLOPT-GTH (a
>> good basis)) is bad for the particular PES ?
>>
>> I would like any advises at all. Do you have success using the Dimer
>> method ? Can you provide input files from successful runs, other than the
>> ones already in the group conversations ?
>>
>> Best Regards,
>> Dobromir
>>
>>
>>
--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+unsubscribe at googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cp2k/53b199cd-9b76-419b-a5d2-6faeeb1f5ef6n%40googlegroups.com.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20221226/d87faf9d/attachment.htm>
More information about the CP2K-user
mailing list