[CP2K-user] [CP2K:17431] CP2K freeze
salvatore.labonia at gmail.com
Wed Aug 3 10:35:18 UTC 2022
we are facing freeze using CP2K on our HPC cluster.
We have totally 94 Dell server but running cp2k v9.1 compiled with intel
compiler and linked with intel mpi library, customer is experiencing
No matter the number or the type of involved nodes.
The freeze happens randomly, not at the same interaction number, even using
the same running command and the same dataset for input.
Looking at processes status on nodes when freeze occurs, they seem to be
running, using CPU but, if we try to attach to any process (and forked
children of course), we can see that they all are sitting on a wait system
call for data coming (orout going) from (to) a pipe.
No other systems call are run by processes…
Slurm thinks that job is still running.
Killing one of the stuck processes causes the death of orher processes and
finally slurm realizes that job has crashed.
Is this behaviour usual in same circumstances (and therefore customer has
something to do to avoid it) or could it be caused by some other reason
(cp2k compilation, mpi version, intel compilers version)?
Is there any way to have a debugging execution of cp2k/mpi with a more or
less verbose output in order to understand at which point/call does the
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