[CP2K-user] [CP2K:16852] Error in CP2K installation

[Krack Matthias (PSI)]

Hi

Note that CP2K does not support GCC version prior GCC 7<https://www.cp2k.org/dev:compiler_support>.

Matthias

From: "cp2k at googlegroups.com" <cp2k at googlegroups.com> on behalf of Premkumar Selvarajan <spremkumar.physics at gmail.com>
Reply to: "cp2k at googlegroups.com" <cp2k at googlegroups.com>
Date: Thursday, 14 April 2022 at 07:01
To: "cp2k at googlegroups.com" <cp2k at googlegroups.com>
Subject: [CP2K:16852] Error in CP2K installation

Dear Everyone,

I am trying to install CP2K in my workstation using the toolchain. However, it is terminated with the following error. I have enclosed herewith the local.ssmp and local.sdbg for your perusal. Your timely help will be highly appreciated. Thanks in advance.

/usr/bin/env python3 /home/prem/cp2k/cp2k-9.1/exts/dbcsr/tools/build_utils/fypp/bin/fypp -n --line-marker-format=gfortran5 /home/prem/cp2k/cp2k-9.1/exts/dbcsr/src/tensors/dbcsr_tensor_block.F dbcsr_tensor_block.F90
gfortran -c -march=native -mtune=native -fno-omit-frame-pointer -g -O3 -funroll-loops  -fopenmp   -I'/home/prem/cp2k/cp2k-9.1/tools/toolchain/install/fftw-3.3.10/include' -I'/home/prem/cp2k/cp2k-9.1/tools/toolchain/install/libint-v2.6.0-cp2k-lmax-5/include' -I'/home/prem/cp2k/cp2k-9.1/tools/toolchain/install/libxc-5.1.7/include' -I'/home/prem/cp2k/cp2k-9.1/tools/toolchain/install/libxsmm-1.17/include' -I/home/prem/cp2k/cp2k-9.1/tools/toolchain/install/spglib-1.16.2/include -fbacktrace -ffree-form -fimplicit-none -std=f2008  -Werror=aliasing -Werror=ampersand -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std -Werror=line-truncation -Werror=tabs -Werror=target-lifetime -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable -Werror=unused-dummy-argument -Werror=conversion -Wno-maybe-uninitialized -Wuninitialized  -D__LIBXSMM  -D__FFTW3  -D__LIBINT -D__LIBXC -D__SPGLIB -D__LIBVORI   -D__SHORT_FILE__="\"dbcsr_tensor_block.F\"" -I'/home/prem/cp2k/cp2k-9.1/exts/dbcsr/src/tensors/' -I'/home/prem/cp2k/cp2k-9.1/exts/dbcsr/src' dbcsr_tensor_block.F90
*** Error in `/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951': double free or corruption (fasttop): 0x00000000022d7ea0 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81329)[0x7f39c9ee6329]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z17gfc_check_reshapeP8gfc_exprS0_S0_S0_+0x259)[0x510874]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x838087]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z28gfc_intrinsic_func_interfaceP8gfc_expri+0x2e3)[0x838bd3]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x859f7f]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z16gfc_resolve_exprP8gfc_expr+0xfd)[0x85b5fd]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x85ef58]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z18gfc_resolve_blocksP8gfc_codeP13gfc_namespace+0x83)[0x8613d3]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x85f372]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z18gfc_resolve_blocksP8gfc_codeP13gfc_namespace+0x83)[0x8613d3]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x85f372]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x861331]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z11gfc_resolveP13gfc_namespace+0x40)[0x859d30]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x85f868]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x861204]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0x8612bc]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z11gfc_resolveP13gfc_namespace+0x40)[0x859d30]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z14gfc_parse_filev+0x66c)[0x853fdc]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0xd9c806]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0xdd4eb5]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951(_Z11toplev_mainiPPc+0x857)[0xdd59d7]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f39c9e87555]
/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/f951[0xd89294]
======= Memory map: ========
00400000-01241000 r-xp 00000000 fd:00 13502823                           /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/f951
01440000-01445000 r--p 00e40000 fd:00 13502823                           /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/f951
01445000-01453000 rw-p 00e45000 fd:00 13502823                           /usr/libexec/gcc/x86_64-redhat-linux/4.8.2/f951
01453000-0151a000 rw-p 00000000 00:00 0
01e87000-02355000 rw-p 00000000 00:00 0                                  [heap]
7f39bc000000-7f39bc021000 rw-p 00000000 00:00 0
7f39bc021000-7f39c0000000 ---p 00000000 00:00 0
7f39c350c000-7f39c3521000 r-xp 00000000 fd:00 13107219                   /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f39c3521000-7f39c3720000 ---p 00015000 fd:00 13107219                   /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f39c3720000-7f39c3721000 r--p 00014000 fd:00 13107219                   /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f39c3721000-7f39c3722000 rw-p 00015000 fd:00 13107219                   /usr/lib64/libgcc_s-4.8.5-20150702.so.1
7f39c3722000-7f39c3922000 rw-p 00000000 00:00 0
7f39c3922000-7f39c9e65000 r--p 00000000 fd:00 13502851                   /usr/lib/locale/locale-archive
7f39c9e65000-7f39ca029000 r-xp 00000000 fd:00 13108949                   /usr/lib64/libc-2.17.so
7f39ca029000-7f39ca228000 ---p 001c4000 fd:00 13108949                   /usr/lib64/libc-2.17.so
7f39ca228000-7f39ca22c000 r--p 001c3000 fd:00 13108949                   /usr/lib64/libc-2.17.so
7f39ca22c000-7f39ca22e000 rw-p 001c7000 fd:00 13108949                   /usr/lib64/libc-2.17.so
7f39ca22e000-7f39ca233000 rw-p 00000000 00:00 0
7f39ca233000-7f39ca334000 r-xp 00000000 fd:00 13108959                   /usr/lib64/libm-2.17.so
7f39ca334000-7f39ca533000 ---p 00101000 fd:00 13108959                   /usr/lib64/libm-2.17.so
7f39ca533000-7f39ca534000 r--p 00100000 fd:00 13108959                   /usr/lib64/libm-2.17.so
7f39ca534000-7f39ca535000 rw-p 00101000 fd:00 13108959                   /usr/lib64/libm-2.17.so
7f39ca535000-7f39ca54a000 r-xp 00000000 fd:00 13109853                   /usr/lib64/libz.so.1.2.7
7f39ca54a000-7f39ca749000 ---p 00015000 fd:00 13109853                   /usr/lib64/libz.so.1.2.7
7f39ca749000-7f39ca74a000 r--p 00014000 fd:00 13109853                   /usr/lib64/libz.so.1.2.7
7f39ca74a000-7f39ca74b000 rw-p 00015000 fd:00 13109853                   /usr/lib64/libz.so.1.2.7
7f39ca74b000-7f39ca7c1000 r-xp 00000000 fd:00 13109346                   /usr/lib64/libgmp.so.10.2.0
7f39ca7c1000-7f39ca9c0000 ---p 00076000 fd:00 13109346                   /usr/lib64/libgmp.so.10.2.0
7f39ca9c0000-7f39ca9c2000 r--p 00075000 fd:00 13109346                   /usr/lib64/libgmp.so.10.2.0
7f39ca9c2000-7f39ca9c3000 rw-p 00077000 fd:00 13109346                   /usr/lib64/libgmp.so.10.2.0
7f39ca9c3000-7f39caa1c000 r-xp 00000000 fd:00 13109699                   /usr/lib64/libmpfr.so.4.1.1
7f39caa1c000-7f39cac1b000 ---p 00059000 fd:00 13109699                   /usr/lib64/libmpfr.so.4.1.1
7f39cac1b000-7f39cac1d000 r--p 00058000 fd:00 13109699                   /usr/lib64/libmpfr.so.4.1.1
7f39cac1d000-7f39cac1e000 rw-p 0005a000 fd:00 13109699                   /usr/lib64/libmpfr.so.4.1.1
7f39cac1e000-7f39cac35000 r-xp 00000000 fd:00 13109846                   /usr/lib64/libmpc.so.3.0.0
7f39cac35000-7f39cae34000 ---p 00017000 fd:00 13109846                   /usr/lib64/libmpc.so.3.0.0
7f39cae34000-7f39cae35000 r--p 00016000 fd:00 13109846                   /usr/lib64/libmpc.so.3.0.0
7f39cae35000-7f39cae36000 rw-p 00017000 fd:00 13109846                   /usr/lib64/libmpc.so.3.0.0
7f39cae36000-7f39cae38000 r-xp 00000000 fd:00 13108956                   /usr/lib64/libdl-2.17.so
7f39cae38000-7f39cb038000 ---p 00002000 fd:00 13108956                   /usr/lib64/libdl-2.17.so
7f39cb038000-7f39cb039000 r--p 00002000 fd:00 13108956                   /usr/lib64/libdl-2.17.so
7f39cb039000-7f39cb03a000 rw-p 00003000 fd:00 13108956                   /usr/lib64/libdl-2.17.so
7f39cb03a000-7f39cb05c000 r-xp 00000000 fd:00 13108941                   /usr/lib64/ld-2.17.so
7f39cb1eb000-7f39cb23d000 rw-p 00000000 00:00 0
7f39cb241000-7f39cb25b000 rw-p 00000000 00:00 0
7f39cb25b000-7f39cb25c000 r--p 00021000 fd:00 13108941                   /usr/lib64/ld-2.17.so
7f39cb25c000-7f39cb25d000 rw-p 00022000 fd:00 13108941                   /usr/lib64/ld-2.17.so
7f39cb25d000-7f39cb25e000 rw-p 00000000 00:00 0
7ffe894c9000-7ffe894ec000 rw-p 00000000 00:00 0                          [stack]
7ffe895dc000-7ffe895de000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]
f951: internal compiler error: Aborted
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://bugzilla.redhat.com/bugzilla> for instructions.
make[4]: *** [dbcsr_tensor_block.o] Error 1
make[3]: *** [libdbcsr] Error 2
make[2]: *** [dbcsr] Error 2
make[1]: *** [ssmp] Error 2
make: *** [all] Error 2.

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