[CP2K-user] [CP2K:16156] Problems with metadynamics postprocessing
Jing Hu
hujingping5 at gmail.com
Tue Nov 2 02:48:01 UTC 2021
Dear cp2k users and developers
I'm learning the metadynamic recently and met the following problems about
postprocessing.
The first one is that in the postprocessing of constructing the free energy
surface, I used 'graph.popt -ndim 2 -ndw 1 2 -file *.restart -find-minima
-cp2k' to get the minimum point on the free energy surface. I got three
sets of data which include two CV values and corresponding free energy
values, respectively. But awkwardly, I cannot find the corresponding CV
value in the original *-COLVAR.metadynLog file and thus fail to find the
specific structural configuration . So, I want to know how to find the
structural configuration corresponding to the minimum point on the free
energy surface.
The second question is that I tried to use 'graph.popt -ndim 2 -ndw 1 2
-file *.restart -find path -point-a CVs -point-b CVs -cp2k' to get the path
between the minimums, but the command lines went wrong as follows:
forrtl: severe (59): list-directed I/O syntax error, unit -5, file Internal
List-Directed Read
Image PC Routine Line Source
graph.popt 00000000004F55FB Unknown Unknown Unknown
graph.popt 000000000051C5B1 Unknown Unknown Unknown
graph.popt 000000000051B2D5 Unknown Unknown Unknown
graph.popt 000000000040E935 MAIN__ 330 graph.F
graph.popt 000000000040CA62 Unknown Unknown Unknown
libc-2.17.so 00002B42666F4555 __libc_start_main Unknown Unknown
graph.popt 000000000040C969 Unknown Unknown Unknow
I have no idea about this problem. If someone can offer some help on any
question between these two, I would be really appreciate!
Regards!
JHu
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