[CP2K-user] [CP2K:14775] CP2K 8.1: Runtime error running on more than one node

Mauro Sgroi maurofran... at gmail.com
Mon Feb 15 21:07:40 UTC 2021


Dear Alin,
thanks a lot for the reply.
With those mpi we are running smoothly Quantum Espresso and other codes.
So it seems strange to find this error.
Best regards,
Mauro Sgroi.
Il giorno lunedì 15 febbraio 2021 alle 18:43:31 UTC+1 al... at gmail.com ha 
scritto:

> Hi Mauro,
>
> seen this before with other codes... the issue invariable ended up due
> to openmpi not playing nicely with the queuing system.
>
> if you want to see if a simple MPI hello world using the above mpi
> actually works....
>
> Regards,
> Alin
> Without Questions there are no Answers!
> ______________________________________________________________________
> Dr. Alin Marin ELENA
> http://alin.elena.space/
> ______________________________________________________________________
>
> On Mon, 15 Feb 2021 at 17:25, Mauro Sgroi
> <mauro... at gmail.com> wrote:
> >
> > Dear Developers,
> > I'm writing to ask you help for setting CP2K on a HPC server.
> > Our IT compiled the code using gcc-8.3.0, openmpi 4.1.0 and the 
> toolchain:
> >
> > cmake-3.18.5 cosma-2.2.0 elpa-2020.05.001 fftw-3.3.8 gsl-2.6 hdf5-1.12.0 
> libint-v2.6.0-cp2k-lmax-5 libvdwxc-0.4.0 libvori-201229 libxc-4.3.4 
> libxsmm-1.16.1 openblas-0.3.10 scalapack-2.1.0 sirius-7.0.0 SpFFT-0.9.13 
> spglib-1.16.0
> >
> > The obtained code works fine on a single node of our server. When we 
> launch it with the command:
> > mpiexec --prefix ${MPI_INST_DIR} -x PATH -x LD_LIBRARY_PATH -n $CORES 
> -machinefile machine_file ${INST_DIR}/cp2k-8.1/exe/local/cp2k.${SOLVER} 
> -inp ${INPUT} 2>&1
> >
> > on more than one node we get the error:
> >
> > [btl_openib_component.c:1699:init_one_device] error obtaining device 
> attributes for mlx5_0 errno says Protocol not supported
> >
> > Could you please give us some advice?
> >
> > Thanks a lot in advance and best regards,
> >
> > Mauro Sgroi.
> > Centro Ricerche FIAT.
> > Italy.
> >
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