[CP2K-user] [CP2K:16407] Unknown Element kind
bharat poudel
bharatpoudel3 at gmail.com
Wed Dec 22 16:20:08 UTC 2021
I got this error while running a md simulation with cp2k:
*Unknown element for KIND <C 13.203000 15.816000
13.931000>. This * * \___/ problem can be fixed specifying properly
elements in PDB or * * | specifying a KIND section or getting
in touch with one of the * * O/|
developers!*
This is the first few lines of of the structure I used.
*C 13.203000 15.816000 13.931000 C
16.157000 16.336000 11.615000 C 17.399000
18.490000 11.117000 C 19.605000 18.928000
12.016000 C 10.364000 12.516000 12.740000
C 10.574000 11.787000 13.918000 C
10.884000 10.426000 13.860000 C 10.779000
10.503000 11.447000 C 8.740000 14.386000
12.806000 C 7.644000 13.325000 12.827000*
The error is associated with the element kind C and I believe I have
correctly mentioned it.
Here is the KIND part of cp2k input:
*&COORD @include 'final_system.xyz' &END COORD &TOPOLOGY
&CENTER_COORDINATES &END &END TOPOLOGY &KIND H BASIS_SET
DZVP-MOLOPT-GTH POTENTIAL GTH-PBE &END KIND &KIND N
BASIS_SET DZVP-MOLOPT-GTH POTENTIAL GTH-PBE &END KIND &KIND C
BASIS_SET DZVP-MOLOPT-GTH POTENTIAL GTH-PBE &END KIND &KIND O
BASIS_SET DZVP-MOLOPT-GTH POTENTIAL GTH-PBE &END KIND*
The version of CP2K that I am using is 7.1.
I think I have missed something (some silly mistake) that I could not
figure out. Any helps/suggestions will be appreciated.
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