[CP2K-user] [CP2K:16331] Setting up QM/MM system

Moser Mario mosermauer at gmail.com
Thu Dec 2 21:37:12 UTC 2021


Dear all,
im still new  to cp2k and im trying to set up a QM/MM system between the 
histidines of my protein and the zinc atoms present in the system 
(system.pdb attached in second message ).
I also attached my input file, im wondering how to select efficiently 
MM_INDEX in &QM_KIND , &LINK with QM_index and MM_index and also RADIUS. 
I did it by hand for MM_INDEX to select the atoms i want to be treated in 
QM and if i want to select more amino acids it wouldn't be very practical, 
i tried this : 
https://docs.bioexcel.eu/qmmm_bpg/en/main/system_preparation/selecting_qm_atoms.html 
but it did not work for me.

Best regards,
Mario.

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