[CP2K-user] constraint the center-of-mass motion in slab-water system
冬tyler
tsd19... at gmail.com
Sat Apr 24 14:54:44 UTC 2021
Dear user,
Recently, I read a paper, as follows, that refers to a methods constraint
centroid move. [image: 捕获.PNG]
By searching in our groups, I try to write an input file and the main
sections are present as follows. I want to appoint a fixed point, which is
the center position of the slab water. And then the second point is the
center position of each MD simulation frame (for simplicity, I only
specified the center of all O atoms). finally, by the &CONSTRAINT section,
I set the TARGET 0.0 for constraint the two center position points.
However, when I observed the result after the cp2k simulation, the organic
over the slab keep still, and the slab water overall sways at the initial
time. So I have two questions.
1.At first, whether these input keywords to constraint the center of the
mass movement is suitable for the presentation of the paper or not?
2.why the organic keep still and How to modify the input file?
&COLVAR
&DISTANCE
POINTS 1 2
&POINT
TYPE FIX_POINT
XYZ 7.771518707275391 7.5088348388671875
5.639843463897705
&END POINT
&POINT
TYPE GEO_CENTER
ATOMS 3 6 9 12 15 18 21 24 27 30
ATOMS 33 36 39 42 45 48 51 54 57 60
ATOMS .......
ATOMS 273 276 279 282 285 288
&END POINT
&END DISTANCE
&END COLVAR
&CONSTRAINT
&COLLECTIVE
COLVAR 1
INTERMOLECULAR TRUE
TARGET 0.0
&RESTRAINT
K [hartree*bohr^-2] 1
&END RESTRAINT
&END COLLECTIVE
&END CONSTRAINT
[image: 1.PNG]
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