[CP2K-user] Issue with atom kind in QM/MM
Rahul Verma
rahul.v... at gmail.com
Wed Apr 14 05:55:18 UTC 2021
Dear Marcella,
Thank you very much. I got the mistake now, I haven't defined the QM
information for the H atom.
Regards
Rahul
On Wednesday, April 14, 2021 at 9:49:05 AM UTC+5:30 Marcella Iannuzzi wrote:
>
> Dear Rahul,
>
> In the QM part H1 and H2 are identical.
> Anyway if you want to keep the two kinds it is OK,
> but you have another kind indicated as link atom, for which the KIND
> section is not given
> &LINK
> LINK_TYPE IMOMM
> QM_INDEX 20
> MM_INDEX 104
> QM_KIND H
> &END LINK
>
> Regards
> Marcella
>
> On Wednesday, April 14, 2021 at 5:06:04 AM UTC+2 rah... at gmail.com
> wrote:
>
>> Hi Marcella,
>> Thanks for the reply.
>>
>> Since I have two different types of H atoms in the system with two
>> different charges, hence using only one KIND will give the wrong result.
>>
>> Thanks
>> Regards
>> Rahul
>>
>> On Tuesday, April 13, 2021 at 9:23:14 PM UTC+5:30 Marcella Iannuzzi wrote:
>>
>>> Hi Rahul,
>>>
>>> have you also tried by adding the KIND H?
>>> Regards
>>> Marcella
>>>
>>> On Monday, April 12, 2021 at 6:05:15 AM UTC+2 rah... at gmail.com
>>> wrote:
>>>
>>>>
>>>>
>>>> Hello everyone,
>>>> I am new in CP2k and trying to do a QMMM calculation, while doing so
>>>> I am getting the following error which, I tried to rectify by looking at
>>>> some examples but couldn't able to figure it out.
>>>>
>>>>
>>>> *******************************************************************************
>>>> * ___
>>>> *
>>>> * / \
>>>> *
>>>> * [ABORT] No &KIND section was possible to associate to the atomic
>>>> kind <H>. *
>>>> * \___/ The KIND section were also scanned for the corresponding
>>>> element *
>>>> * | <H> and for the DEFAULT section but no match was found.
>>>> Check your *
>>>> * O/| input file!
>>>> *
>>>> * /| |
>>>> *
>>>> * / \
>>>> qs_kind_types.F:1514 *
>>>>
>>>> *******************************************************************************
>>>>
>>>> I am hereby attaching the input and output files for reference.
>>>>
>>>> Thanks in advance.
>>>>
>>>> Regards
>>>> Rahul
>>>>
>>>>
>>>>
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