[CP2K-user] Can RMSD be used as a constraint CV ?
Adams ke
gaoisp... at gmail.com
Thu Oct 15 17:26:56 UTC 2020
Hello everyone:
I am new to CP2K. Recently I've struggling to use thermodynamics
intergration
technique to compute the free energy change of a system with RMSD as CV,
following
the lecture given by Dr. Marcella Iannuzzi
http://archer.ac.uk/training/course-material/2014/04/PMMP_UCL/Slides/cp2k_2.pdf
--------------------------------------------------
&COLVAR
&RMSD
&FRAME
COORD_FILE_NAME static.xyz
&END
&END
&END COLVAR
---------------------------------------------------------
Then, the constraint section is:
--------------------------------------------------------
&CONSTRAINT
&COLLECTIVE
COLVAR 1
INTERMOLECULAR
TARGET 2.0
&END COLLECTIVE
&END CONSTRAINT
----------------------------------------------------------------
*The error is :*
*******************************************************************************
* ___
*
* / \
*
* [ABORT]
*
* \___/
*
* |
*
* O/|
*
* /| |
*
* / \
subsys/molecule_kind_types.F:309 *
*******************************************************************************
After checking the source code
* subsys/molecule_kind_types.F, from line 256 to line
309 *
I found there is no way for this to run at all, because RMSD is not
implented as a case
in this subroutine, though many CVs have been implemented.
Link to the source code
https://github.com/cp2k/cp2k/blob/master/src/subsys/molecule_kind_types.F
Is there any way to get around this ? I've been struggling for quite a
while, any help would be much appreciated.
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