[CP2K-user] The bond and bend parameters of MM in CP2K
Marcella Iannuzzi
marci... at gmail.com
Wed Nov 11 07:56:47 UTC 2020
Dear Junbo
The keyword you added just defines molecules but it does not give
information about the intramolecular connectivity.
You can either try with GENERATE or better provide a connectivity file (psf)
Marcella
On Wednesday, November 11, 2020 at 5:29:29 AM UTC+1 lu... at gmail.com wrote:
> Hi Marcella,
> Thank you very much! I try to add connectivity in COOR section. But
> the MM enenrgy is still 0. My new input file is attached.
> With my best regards,
> Junbo
>
> 在2020年11月10日星期二 UTC+8 下午8:43:19<Marcella Iannuzzi> 写道:
>
>> Dear Junbo
>>
>> In order to add bond and bend terms to the force field a connectivity
>> file is needed where the topology of the molecular system is defined.
>> Kind regards
>> Marcella
>>
>> On Tuesday, November 10, 2020 at 1:39:28 PM UTC+1 lu... at gmail.com
>> wrote:
>>
>>> Hi,
>>> I try to add bond and bend parameters in MM calculations. But I find
>>> that CP2K can not read the input bond and bend parameters. As a test, I
>>> turn off the L-J and charge parameter, and I find that the MM energy for
>>> each MD step is zero. I am confused with this. The attached files are my
>>> input file and coordinates file. Could anyone give me a help? I really
>>> appreciate it!
>>> With my best regards,
>>> Junbo
>>>
>>
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