[CP2K-user] AD_LANGEVIN thermostat for QM/MM with fixed_atoms
Mayank Dodia
mayan... at gmail.com
Wed May 6 14:59:38 UTC 2020
Hello all,
As a test I tried a simple MM water box simulation (files attached here).
When the thermostat settings are:
&THERMOSTAT
REGION MASSIVE
! REGION GLOBAL
TYPE AD_LANGEVIN
&AD_LANGEVIN
TIMECON_LANGEVIN 100
TIMECON_NH 100
&END AD_LANGEVIN
&END THERMOSTAT
(MM.inp)
I can run the simulation. However when I change the REGION MASSIVE to
REGION GLOBAL I receive the error:
*******************************************************************************
*
___ *
* /
\ *
*
[ABORT]
*
* \___/ Potential energy is an abnormal value
(NaN/Inf). *
*
| *
*
O/| *
* /|
| *
* / \
force_env_methods.F:353 *
*******************************************************************************
===== Routine Calling Stack =====
3 velocity_verlet
2 qs_mol_dyn_low
1 CP2K
If I use the Nose-Hoover thermostat (MM_v2.inp), the run executed without
any errors. So is not possible to set REGION GLOBAL, and hence use fixed
atoms with AD_LANGEVIN thermostat?
Best Regards,
Mayank
On Sunday, April 26, 2020 at 10:36:20 PM UTC+2, Mayank Dodia wrote:
>
> Hi,
>
> I was trying to test AD_LANGEVIN thermostat settings for a QM/MM system
> with fixed MM atoms. So instead of using REGION MASSIVE for the thermostat
> settings I am using REGION GLOBAL. When I tested this setting with cp2k
> regtest files in ../cp2k/tests/QMMM/SE/regtest-force-mixing/
> (Lysozyme_small_NVT.inp and tyrosine_NVT.inp), I get the error message
> below for REGION GLOBAL:
>
>
> *******************************************************************************
> * ___
> *
> * / \
> *
> * [ABORT]
> *
> * \___/ QM/MM QM atoms must be fully contained in the same image of
> the QM *
> * | box - No wrapping of coordinates is allowed!
> *
> * O/|
> *
> * /| |
> *
> * / \
> qmmm_force.F:141 *
>
> *******************************************************************************
>
> which is does appear for REGION MASSIVE. Similarly if I change the
> settings to THERMOSTAT CSVR and REGION GLOBAL I do not receive this error.
> I have checked this with cp2k v. 7.0 (git:d15a9c53f) and 8.0 (git:91d9f7f).
> Does anyone have any ideas on how to resolve this issue or if I am using
> incorrect settings?
>
> Best Regards,
> Mayank
>
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