[CP2K-user] Geo-opt for gas molecule (
Xin Wei
goweix... at gmail.com
Tue Jun 30 04:37:32 UTC 2020
Hello everyone,
I am doing geometry optimization using cp2k for isopropanol alcohol (gas
phase). However, I don't know how to fix the error below: Can anyone help
me with it? (I centered my molecule using &CENTER_COORDINATES)
*** WARNING in pw/ps_wavelet_methods.F:236 :: Density non-zero on the edges
of the unit cell: wrong results in WAVELET solver
Will the cell size affect the geometry optimization results for
single-molecule in the gas phase? and do I have to use a cubic cell?
&CELL
PERIODIC NONE
ABC 14.83 14.83 14.83
ALPHA_BETA_GAMMA 60.0 60.0 60.0
&END CELL
Here is my input file: (my output file and xyz file are attached)
&GLOBAL
PROJECT IPA
RUN_TYPE GEO_OPT
PRINT_LEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD Quickstep
&DFT
BASIS_SET_FILE_NAME
/ihome/crc/build/cp2k/cp2k-6.1-intel-mkl/data/BASIS_MOLOPT
&POISSON
PERIODIC NONE
PSOLVER WAVELET
&END POISSON
&QS
METHOD GAPW
&END QS
&SCF
SCF_GUESS ATOMIC
EPS_SCF 1.0E-05
MAX_SCF 200
&DIAGONALIZATION T
ALGORITHM STANDARD
&END DIAGONALIZATION
&MIXING T
ALPHA 0.5
METHOD PULAY_MIXING
NPULAY 5
&END MIXING
&PRINT
&RESTART OFF
&END RESTART
&END PRINT
&END SCF
&XC
&XC_FUNCTIONAL
&PBE
&END
&END XC_FUNCTIONAL
! add Grimme D3 correction (without C9 terms, default)
&VDW_POTENTIAL
POTENTIAL_TYPE PAIR_POTENTIAL
&PAIR_POTENTIAL
PARAMETER_FILE_NAME dftd3.dat
TYPE DFTD3
REFERENCE_FUNCTIONAL PBE
R_CUTOFF [angstrom] 16
&END
&END VDW_POTENTIAL
&END XC
&END DFT
&SUBSYS
&CELL
PERIODIC NONE
ABC 14.83 14.83 14.83
ALPHA_BETA_GAMMA 60.0 60.0 60.0
&END CELL
&TOPOLOGY
&CENTER_COORDINATES
&END CENTER_COORDINATES
COORD_FILE_NAME IPA.xyz
COORD_FILE_FORMAT XYZ
&END
&KIND C
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q4
&END KIND
&KIND H
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q1
&END KIND
&KIND O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND Zr
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END KIND
&END SUBSYS
&END FORCE_EVAL
&MOTION
&GEO_OPT
OPTIMIZER BFGS
MAX_ITER 1500
MAX_DR [bohr] 0.003
&BFGS
&END
&END
&PRINT
&RESTART
BACKUP_COPIES 0
&END RESTART
&END PRINT
&END
Thanks!!!
Xin
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