[CP2K-user] [CP2K:13474] Restart NVT

Lucas Lodeiro eluni... at gmail.com
Sun Jun 7 15:09:08 UTC 2020


Thanks Thomas, I was a little confused between restart and resetting, now
its clear for me :).

Regards!

El dom., 7 jun. 2020 a las 6:34, Thomas Kühne (<tku... at gmail.com>)
escribió:

> Dear Lucas
>
> simply set RESTART_THERMOSTAT TRUE (or remove the line since this is the
> default)
> to restart the state of the thermostat. The behavior you observe is an
> artifact due to restarting
> positions and velocities but resetting the thermostat …
>
> Cheers,
> Thomas
>
> Am 07.06.2020 um 04:09 schrieb Lucas Lodeiro <eluni... at gmail.com>:
>
> Hi all,
>
> I am running NVT water box AIMD in CP2K 7.0.
> The run stopped this morning due to node problem, but I can restart it
> using the restart file.
> But I see some differences that I can not understand.
>
> I use the same input data to do the restart, but I added:
>
> &EXT_RESTART
>   EXTERNAL_FILE              WATER-1.restart
>   RESTART_THERMOSTAT         .FALSE.
> &END EXT_RESTART
>
> To restart the calculation and to not restart the thermostat. I guess this
> is the correct way to restart a MD without changing the thermostat
> behaviour.
> But in the first step I see some weird data in *.ener file.
> I see in the first new step, the Cons Qty[a.u.] change a little, respect
> the last step after MD stopped.
> Also for the n-last steps after MD stopped, the temperature oscillates
> just +-10°C around the objective temperature and the average temperature
> was the correct objective temperature. In the first n-steps of the restart
> MD, the temperature starts oscillating more than 10 °C (in cases 30°C), but
> the average temperature was correct respect the last average temperature
> and objective temperature.
> This is a part of the data (step 28945 is the first step of restart MD):
>
>      28925        14462.500000         0.524397237       292.822905020
> -2167.386128946     -2166.788489113         9.942549903
>      28926        14463.000000         0.523902002       292.546366555
> -2167.385787588     -2166.788513509        18.580139473
>      28927        14463.500000         0.521503538       291.207066513
> -2167.383420424     -2166.788416738        15.250579394
>      28928        14464.000000         0.518609792       289.591201566
> -2167.380528831     -2166.788292618        17.792272486
>      28929        14464.500000         0.517109605       288.753498602
> -2167.379085941     -2166.788225441        10.424001478
>      28930        14465.000000         0.518164941       289.342797441
> -2167.380271236     -2166.788232301         9.924992632
>      28931        14465.500000         0.521824007       291.386016117
> -2167.384120605     -2166.788300216        15.055006087
>      28932        14466.000000         0.527128166       294.347853254
> -2167.389667610     -2166.788420716        10.627952956
>      28933        14466.500000         0.532342877       297.259742512
> -2167.395139856     -2166.788555528        14.917385891
>      28934        14467.000000         0.535600841       299.078986930
> -2167.398592480     -2166.788627084        10.879262459
>      28935        14467.500000         0.535936944       299.266666470
> -2167.399018273     -2166.788593698        10.006427173
>      28936        14468.000000         0.533834852       298.092860267
> -2167.396936550     -2166.788491610         9.977815259
>      28937        14468.500000         0.530754526       296.372809252
> -2167.393877604     -2166.788391632        10.085333489
>      28938        14469.000000         0.528128677       294.906537823
> -2167.391326816     -2166.788346629        10.028149899
>      28939        14469.500000         0.526585940       294.045074707
> -2167.389919732     -2166.788363449         9.960049219
>      28940        14470.000000         0.525859267       293.639301105
> -2167.389345953     -2166.788398597        14.496977419
>      28941        14470.500000         0.525379287       293.371280876
> -2167.388985539     -2166.788401415        14.967396073
>      28942        14471.000000         0.524959273       293.136745417
> -2167.388649341     -2166.788369463        10.315914560
>      28943        14471.500000         0.524874770       293.089558993
> -2167.388653910     -2166.788343715        16.983571853
>      28944        14472.000000         0.525392050       293.378407716
> -2167.389290137     -2166.788348686        12.119731613
>      28945        14472.500000         0.526406871       293.945083066
> -2167.390481370     -2166.863446252        47.022801183
>      28946        14473.000000         0.527734481       294.686419018
> -2167.391978869     -2166.863459996        11.051850852
>      28947        14473.500000         0.529255279       295.535631285
> -2167.393652283     -2166.863456336        10.006576888
>      28948        14474.000000         0.531086126       296.557974111
> -2167.395616229     -2166.863432883         9.709443437
>      28949        14474.500000         0.533577404       297.949101425
> -2167.398244277     -2166.863412585         9.787318693
>      28950        14475.000000         0.537016875       299.869698620
> -2167.401858321     -2166.863429212         9.785394795
>      28951        14475.500000         0.541258217       302.238060033
> -2167.406305123     -2166.863475419         9.731476160
>      28952        14476.000000         0.545774333       304.759854865
> -2167.411027429     -2166.863520675         9.752394203
>      28953        14476.500000         0.549990896       307.114379332
> -2167.415448002     -2166.863561837         9.763660893
>      28954        14477.000000         0.553359699       308.995515632
> -2167.419028509     -2166.863608727         9.769082915
>      28955        14477.500000         0.555299389       310.078636660
> -2167.421167132     -2166.863641041         9.809159193
>      28956        14478.000000         0.555434584       310.154129550
> -2167.421461446     -2166.863632113         9.759279175
>      28957        14478.500000         0.553874622       309.283048227
> -2167.420037090     -2166.863598770         9.749239432
>      28958        14479.000000         0.551014039       307.685701343
> -2167.417323889     -2166.863576839         9.767714364
>      28959        14479.500000         0.547123637       305.513304502
> -2167.413592074     -2166.863566261         9.815094918
>      28960        14480.000000         0.542330631       302.836894640
> -2167.408945453     -2166.863544138         9.748038203
>      28961        14480.500000         0.536899528       299.804172240
> -2167.403638144     -2166.863500571        10.112055471
>      28962        14481.000000         0.531402812       296.734811186
> -2167.398244733     -2166.863438049         9.841474611
>      28963        14481.500000         0.526676227       294.095490925
> -2167.393620245     -2166.863376014         9.819765911
>      28964        14482.000000         0.523490986       292.316855534
> -2167.390580350     -2166.863358790         9.816407133
>      28965        14482.500000         0.521971605       291.468434880
> -2167.389273875     -2166.863410344         9.819614979
>      28966        14483.000000         0.521357575       291.125560959
> -2167.388891848     -2166.863481893         9.822640346
>
> Why is happening this step shift in the conserved quantity, and the change
> in the temperature MD behaviour? Is this normal for a restart MD?
>
> Regards
>
>
>
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>
>
>
> ==============================
> Thomas D. Kühne
> Dynamics of Condensed Matter
> Chair of Theoretical Chemistry
> University of Paderborn
> Warburger Str. 100
> D-33098 Paderborn
> Germany
> tdku... at mail.upb.de
> +49/(0)5251/60-5726
>
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