[CP2K-user] Restart NVT
Lucas Lodeiro
eluni... at gmail.com
Sun Jun 7 02:09:20 UTC 2020
Hi all,
I am running NVT water box AIMD in CP2K 7.0.
The run stopped this morning due to node problem, but I can restart it
using the restart file.
But I see some differences that I can not understand.
I use the same input data to do the restart, but I added:
&EXT_RESTART
EXTERNAL_FILE WATER-1.restart
RESTART_THERMOSTAT .FALSE.
&END EXT_RESTART
To restart the calculation and to not restart the thermostat. I guess this
is the correct way to restart a MD without changing the thermostat
behaviour.
But in the first step I see some weird data in *.ener file.
I see in the first new step, the Cons Qty[a.u.] change a little, respect
the last step after MD stopped.
Also for the n-last steps after MD stopped, the temperature oscillates just
+-10°C around the objective temperature and the average temperature was the
correct objective temperature. In the first n-steps of the restart MD, the
temperature starts oscillating more than 10 °C (in cases 30°C), but the
average temperature was correct respect the last average temperature and
objective temperature.
This is a part of the data (step 28945 is the first step of restart MD):
28925 14462.500000 0.524397237 292.822905020
-2167.386128946 -2166.788489113 9.942549903
28926 14463.000000 0.523902002 292.546366555
-2167.385787588 -2166.788513509 18.580139473
28927 14463.500000 0.521503538 291.207066513
-2167.383420424 -2166.788416738 15.250579394
28928 14464.000000 0.518609792 289.591201566
-2167.380528831 -2166.788292618 17.792272486
28929 14464.500000 0.517109605 288.753498602
-2167.379085941 -2166.788225441 10.424001478
28930 14465.000000 0.518164941 289.342797441
-2167.380271236 -2166.788232301 9.924992632
28931 14465.500000 0.521824007 291.386016117
-2167.384120605 -2166.788300216 15.055006087
28932 14466.000000 0.527128166 294.347853254
-2167.389667610 -2166.788420716 10.627952956
28933 14466.500000 0.532342877 297.259742512
-2167.395139856 -2166.788555528 14.917385891
28934 14467.000000 0.535600841 299.078986930
-2167.398592480 -2166.788627084 10.879262459
28935 14467.500000 0.535936944 299.266666470
-2167.399018273 -2166.788593698 10.006427173
28936 14468.000000 0.533834852 298.092860267
-2167.396936550 -2166.788491610 9.977815259
28937 14468.500000 0.530754526 296.372809252
-2167.393877604 -2166.788391632 10.085333489
28938 14469.000000 0.528128677 294.906537823
-2167.391326816 -2166.788346629 10.028149899
28939 14469.500000 0.526585940 294.045074707
-2167.389919732 -2166.788363449 9.960049219
28940 14470.000000 0.525859267 293.639301105
-2167.389345953 -2166.788398597 14.496977419
28941 14470.500000 0.525379287 293.371280876
-2167.388985539 -2166.788401415 14.967396073
28942 14471.000000 0.524959273 293.136745417
-2167.388649341 -2166.788369463 10.315914560
28943 14471.500000 0.524874770 293.089558993
-2167.388653910 -2166.788343715 16.983571853
28944 14472.000000 0.525392050 293.378407716
-2167.389290137 -2166.788348686 12.119731613
28945 14472.500000 0.526406871 293.945083066
-2167.390481370 -2166.863446252 47.022801183
28946 14473.000000 0.527734481 294.686419018
-2167.391978869 -2166.863459996 11.051850852
28947 14473.500000 0.529255279 295.535631285
-2167.393652283 -2166.863456336 10.006576888
28948 14474.000000 0.531086126 296.557974111
-2167.395616229 -2166.863432883 9.709443437
28949 14474.500000 0.533577404 297.949101425
-2167.398244277 -2166.863412585 9.787318693
28950 14475.000000 0.537016875 299.869698620
-2167.401858321 -2166.863429212 9.785394795
28951 14475.500000 0.541258217 302.238060033
-2167.406305123 -2166.863475419 9.731476160
28952 14476.000000 0.545774333 304.759854865
-2167.411027429 -2166.863520675 9.752394203
28953 14476.500000 0.549990896 307.114379332
-2167.415448002 -2166.863561837 9.763660893
28954 14477.000000 0.553359699 308.995515632
-2167.419028509 -2166.863608727 9.769082915
28955 14477.500000 0.555299389 310.078636660
-2167.421167132 -2166.863641041 9.809159193
28956 14478.000000 0.555434584 310.154129550
-2167.421461446 -2166.863632113 9.759279175
28957 14478.500000 0.553874622 309.283048227
-2167.420037090 -2166.863598770 9.749239432
28958 14479.000000 0.551014039 307.685701343
-2167.417323889 -2166.863576839 9.767714364
28959 14479.500000 0.547123637 305.513304502
-2167.413592074 -2166.863566261 9.815094918
28960 14480.000000 0.542330631 302.836894640
-2167.408945453 -2166.863544138 9.748038203
28961 14480.500000 0.536899528 299.804172240
-2167.403638144 -2166.863500571 10.112055471
28962 14481.000000 0.531402812 296.734811186
-2167.398244733 -2166.863438049 9.841474611
28963 14481.500000 0.526676227 294.095490925
-2167.393620245 -2166.863376014 9.819765911
28964 14482.000000 0.523490986 292.316855534
-2167.390580350 -2166.863358790 9.816407133
28965 14482.500000 0.521971605 291.468434880
-2167.389273875 -2166.863410344 9.819614979
28966 14483.000000 0.521357575 291.125560959
-2167.388891848 -2166.863481893 9.822640346
Why is happening this step shift in the conserved quantity, and the change
in the temperature MD behaviour? Is this normal for a restart MD?
Regards
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