[CP2K-user] INCORRECT TORSION ENERGY WHEN USING AMBER PARAMETERS
Ajay Muralidharan
ajay... at gmail.com
Thu Jan 23 23:03:58 UTC 2020
Hello all,
I noticed that torsions evaluated by CP2K when using AMBER parameters are
exactly half of the correct answer. Here is the description below.
I do single point energies of a small dipeptide in vacuum using amber
forcefield. (attached input files)
Gromacs and OPENMM give the same intramolecular energy components.
_____________________________________________
However CP2K does not:
more 1.out | grep -A 2 "FIST energy"
FIST energy contributions in kcal/mol:
BOND = 17.8009 ANGLE = 34.4220 UBRAD = 0.0000
TORSION = 10.0356 IMPTORS = 0.0000 OPBEND = 0.0000
BOND = 17.8009* 4.184 = 74.478 kJ/mol
ANGLE = 34.4220 * 4.184 = 144.021 kJ/mol
TORSION = 10.0356 * 4.184 = *41.988 kJ/mol*
_____________________________________________________
GROMACS (after converting amber.prmtop -> Gromacs topology)
BOND = 74.478 kJ/mol
ANGLE = 144.021 kJ/mol
TOTAL TORSIONS = 80.691(proper) + 3.2858 (improper) = *83.3549 kJ/mol *
*(Exactly double as that from CP2K!) *
TOTAL PE = ~251 kJ/mol. (This matches exactly with OPENMM when using
amber.prmtop )
So Gromacs and openmm results agree with each other.
______________________________________________________
Then saw this post:
*https://groups.google.com/forum/#!searchin/cp2k/amber$20torsion%7Csort:date/cp2k/PeMpumD2oXU/1uWBed2IfhkJ
<https://groups.google.com/forum/#!searchin/cp2k/amber$20torsion%7Csort:date/cp2k/PeMpumD2oXU/1uWBed2IfhkJ>*
mpirun -n 1 cp2k.popt --version
CP2K version 6.1
SVN source code revision svn:18464
cp2kflags: libint fftw3 libxc parallel mpi3 scalapack xsmm
libderiv_max_am1=5 libint_max_am=6 plumed2 mkl
*(Seems like TORSIONS is still broken in svn:18464)*
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