[CP2K-user] [CP2K:12442] Mixed Hamiltonian Simulation
Patrick Gono
patri... at gmail.com
Sun Nov 3 19:20:09 UTC 2019
Dear Farzaneh,
Unfortunately, the mixing equation does not display for me. I can only
assume it represents linear mixing like this: H = lambda * H2 + (1 -
lambda) * H1.
In case it does, please find attached the input file for a mixed
Hamiltonian molecular dynamics simulation with different charges. The file
input.inp will, upon submitting it as the input file, include input.inc
twice, each version with the appropriate charge (defaulted to 0 in one
case, equal to 1 in the other). I hope that you can adapt this input to
your needs.
Yours sincerely,
Patrick Gono
On Thu, Oct 31, 2019 at 2:47 PM farzaneh sarrami <sarrami... at gmail.com>
wrote:
>
>
> Hi Cp2k professionals,
>
> I want to do Mixed Hamiltonian Simulation for reduced and oxidised state
> (Ab initio-MD) I know it can be done in Cp2k but I don't know how?
> I am using this equation with coupling parameter (which can change from 0
> to 1)
>
>
> I really appreciate if you can give me practical advices to do this.
>
>
> Farzaneh
>
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&FORCE_EVAL
METHOD ${METHOD}
&MIXED
MIXING_TYPE GENMIX
&GENERIC
! X: Energy force_eval 2 (system 1)
! Y: Energy force_eval 3 (system 2)
MIXING_FUNCTION (1 - k) * X + k * Y
VARIABLES X Y
PARAMETERS k
VALUES ${LAMBDA}
&END
! number of MPI processes for each FORCE_EVAL
GROUP_PARTITION 256 256
&PRINT
&DIPOLE OFF
&END
&END
&END MIXED
&DFT
BASIS_SET_FILE_NAME ./BASIS
BASIS_SET_FILE_NAME ./BASIS_MOLOPT
POTENTIAL_FILE_NAME ./GTH_POTENTIALS
WFN_RESTART_FILE_NAME ./RESTART-${a}.wfn
LSD
@IF ${a}==2
! charge 0 by default in system 1; set to 1 in system 2
CHARGE 1
@ENDIF
&MGRID
CUTOFF 500
REL_CUTOFF 60
&END MGRID
&QS
EPS_DEFAULT 1.0E-15
&END QS
&SCF
SCF_GUESS RESTART
EPS_SCF 1.0E-6
MAX_SCF 50
&OT
MINIMIZER CG
PRECONDITIONER FULL_SINGLE_INVERSE
&END
&OUTER_SCF
EPS_SCF 1.0E-6
MAX_SCF 20
&END
&PRINT
&RESTART ON
&EACH
MD 100
&END EACH
&END RESTART
&END PRINT
&END SCF
&XC
&XC_FUNCTIONAL
&LIBXC
FUNCTIONAL XC_GGA_X_RPW86 XC_GGA_C_PBE
&END LIBXC
&END XC_FUNCTIONAL
&vdW_POTENTIAL
DISPERSION_FUNCTIONAL NON_LOCAL
&NON_LOCAL
TYPE RVV10
PARAMETERS 9.3 0.0093
KERNEL_FILE_NAME ./rVV10_kernel_table.dat
CUTOFF 400
&END NON_LOCAL
&END vdW_POTENTIAL
&END XC
&PRINT
&MO_CUBES
NHOMO 1
NLUMO 1
WRITE_CUBE F
&EACH
MD 1
&END EACH
&END MO_CUBES
&END PRINT
&END DFT
&SUBSYS
&CELL
ABC [angstrom] YOUR CELL PARAMETERS
&END CELL
&TOPOLOGY
COORD_FILE_NAME ./YOUR_STRUCTURE.xyz
COORD_FILE_FORMAT xyz
&END TOPOLOGY
&KIND Ti
BASIS_SET DZVP-MOLOPT-SR-GTH-q12
POTENTIAL GTH-PBE-q12
&END KIND
&KIND H
BASIS_SET cc-TZ
POTENTIAL GTH-PBE-q1
&END KIND
&KIND O
BASIS_SET cc-TZ
POTENTIAL GTH-PBE-q6
&END KIND
&END SUBSYS
&END FORCE_EVAL
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