[CP2K-user] [CP2K:11773] Re: missing atoms in cell after REORDER

Travis polla... at gmail.com
Mon Jun 24 14:09:26 UTC 2019


Hi,

VESTA reports the total number of atoms including the atoms drawn outside 
the box. It is the wrong number. Edit -> Bonds -> Under boundary mode click 
- 'Do not search atoms beyond boundary'. This gives 340 atoms with a number 
of partial occupancy sites. Your calculation otherwise ran as expected.

-T


On Saturday, June 22, 2019 at 6:19:55 AM UTC-3, Mozhdeh wrote:
>
> Dear experts
>
> I did what Travis said, but again the same problem occurred! there are 
> exactly 700 atoms in the cif file but clearly there are 328 atoms in the 
> out-put file. would any one can find out where does the problem originate?
> TIA
> Mozhdeh
>
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