Running CDFT Tutorial Calculation on Cluster
Brian Day
22b... at gmail.com
Tue Jul 24 18:33:30 UTC 2018
Hi Nico,
Two follow up questions:
1. When I went to run the fragment based CDFT calculations, I got the
following error
Reading the cube file:
water-dimer-frag-a-pbe-energy-ELECTRON_DENSITY-1_0.cube
Reading the cube file:
water-dimer-frag-b-pbe-energy-ELECTRON_DENSITY-1_0.cube
*******************************************************************************
* ___
*
* / \
*
* [ABORT]
*
* \___/ The number of electrons in the reference and interacting
*
* | configurations does not match. Check your fragment cube
files. *
* O/|
*
* /| |
*
* / \ qs_cdft_methods.F:958
*
*******************************************************************************
Visually inspecting the files, there didn't seem to be any issue with
either (I've attached each of them). But it may be related to the second
issue I ran into.
2. When I tried to run each of the fragment for the charge transfer energy,
the calculation portion ran fine, but I got a SIGSEGV (forrtl: severe
(174): SIGSEGV, segmentation fault occurred) error when it tried to write
the electron density cube files. It would simply output a blank file, and
then break. I was able to fix this by passing in the blank file of the
appropriate name (giving me the files above), but it seemed like an odd
error. I'm not sure if this has something to do with the way CP2K 6.1 is
complied on our cluster, or if it is an artifact of the way the code was
written. I have a ticket regarding this issue open with the computing
center here, and can update if they let me know anything useful.
I also can recreate the error and send the full output file if that would
be of any benefit to you.
Thanks and Regards,
Brian
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