[CP2K-user] QM water molecules tend to accumulate at the borders of the QM cell in periodic QM/MM simulation
Sal
sria... at uci.edu
Thu Dec 6 17:57:42 UTC 2018
Dear CP2K developers,
I am running periodic QM/MM simulation (BLYP/TZV2P with GTH-BLYP) that
includes water, protein and lipid.
Problem is that few water molecules are pushed against the edge even with
a hard quadratic wall (K=40 kcalmol/angstrom^2).
QM cell dimensions are chosen to be ~2 A larger than QM size.
I am wondering if you know any specific parameter setting (e. g. # of LIB
in GEEP, NGRIDS, GPW cutoffs, ...) would cause this.
Thanks for your time,
Sal
More detail about my QM/MM setup:
&MGRID
COMMENSURATE
&RS_GRID
DISTRIBUTION_TYPE DISTRIBUTED
&END RS_GRID
CUTOFF 360
NGRIDS 4
REL_CUTOFF 60
&END MGRID
&QS
METHOD GPW
EPS_DEFAULT 1.0E-10
MAP_CONSISTENT TRUE
EXTRAPOLATION ASPC
EXTRAPOLATION_ORDER 3
&END QS
&SCF
MAX_SCF 30
EPS_SCF 1.0E-6
SCF_GUESS RESTART
# SCF_GUESS ATOMIC
&OT T
MINIMIZER DIIS
N_DIIS 7
&END OT
&OUTER_SCF
MAX_SCF 3
EPS_SCF 1.0E-6
&END OUTER_SCF
&XC
&XC_FUNCTIONAL BLYP
&END XC_FUNCTIONAL
&VDW_POTENTIAL
POTENTIAL_TYPE PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD3
PARAMETER_FILE_NAME dftd3.dat
REFERENCE_FUNCTIONAL BLYP
&END PAIR_POTENTIAL
&END VDW_POTENTIAL
&END XC
.....
.....
.....
E_COUPL GAUSS
USE_GEEP_LIB 9
&PERIODIC
GMAX 1.0
&MULTIPOLE
EWALD_PRECISION 1.0E-6
# NGRIDS 16 16 24
ANALYTICAL_GTERM
RCUT 14.0
&END MULTIPOLE
&END PERIODIC
&CELL
ABC [angstrom] 15 16 22
PERIODIC XYZ
&END CELL
CENTER NEVER
&WALLS
type quadratic
k [kcalmol/angstrom^2] 40.0
WALL_SKIN 1.0 1.0 1.0
&END WALLS
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