cp2k stops execuation without being terminated: memory leaks
Sangkha Borah
sbor... at gmail.com
Thu Sep 21 08:05:04 UTC 2017
Hi everyone,
I need some help regarding cp2k installation in parallel on a
supercomputer with specifications given in the link: https://www.iitg.ernet.in/param-ishan
. <https://www.iitg.ernet.in/param-ishan>I am trying to install the popt
version with the following arch file
#
------------------------------------------------------------------------------------------------------------------------------------------------------
# Arch file targeting Linux 64-bit using the Intel tool chain
ROOT := $(dir $(word $(words $(MAKEFILE_LIST)), $(MAKEFILE_LIST)))
ACC := 0
SMP := 0
include $(ROOT)Linux-x86-64-intel-mic.psmp
INTEL_MKL =/cm/shared/apps/intel/compilers_and_libraries/2016.2.181/mkl
INTEL_INC = $(INTEL_MKL)/include/fftw
INTEL_LIB = $(INTEL_MKL)/lib/intel64
CC = mpiicc
FC = mpiifort
LD = mpiifort
AR = /usr/bin/ar -r
DFLAGS =-D__FFTW3 -D__FFTSG -D__FFTMKL -D__parallel -D__BLACS -D__SCALAPACK
-D__MKL
CPPFLAGS = -C -traditional $(DFLAGS) -I$(INTEL_INC)
#FCFLAGS = $(DFLAGS) -I$(INTEL_INC) -O2 -xHost -heap-arrays 64 -fpp -free
–unroll -pc 64 -convert big_endian
FCFLAGS = $(DFLAGS) -I$(INTEL_INC) -O2 -xHost -fpp -free -pc 64 -convert
big_endian
LDFLAGS = $(FCFLAGS) -static-intel
MKL_LIB=/cm/shared/apps/intel/compilers_and_libraries/2016.2.181/mkl/lib/intel64
LIBS = -L$(INTEL_LIB) -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
-lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64
OBJECTS_ARCHITECTURE = machine_intel.o
optimize_ri_basis.o: mp2_optimize_ri_basis.F
$(FC) -c $(FCFLAGS2) $<
#
------------------------------------------------------------------------------------------------------------------------------------------------------
Everything goes fine as far as the installation is concerned, also runs
fine for about 1 ps with time step of 0.5 fs for integration, and then
stops, every time, at the following line:
" Number of independent orbital
functions: 2466"
Following previous posts and whatsoever I got from internet surfing, I
tried to modify the arch file, but without any success. For example, (i) I
installed with a different mkl version (parallel_studio_xe),
(ii) tried combinations of the last two lines of the above scripts, (iii)
compiled without fftw (iv) changed FCFLAGS, (v) tried installing different
versions of cp2k, etc. I guess it must be due to some kinds of memory
leaks.
Thanks in advance.
Best regards,
Sangkha Borah
Dept. of Physics, IIT Guwahati, India
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20170921/531b6e22/attachment.htm>
More information about the CP2K-user
mailing list