restarting NPT MD
Luca
luca.d... at gmail.com
Mon Oct 16 20:08:56 UTC 2017
Dear Marcella
thank you for your answer. Putting RESTART DEFAULTS T fixes the oscillation
in the average pressure.
However, I am still not able to restart an NPT_F from the NPT_I. I also
added the key RESTART_CELL T,
but just after the first scf -loop I get the error
MD_ENERGIES| Initialization proceeding
******************************** GO CP2K GO!
**********************************
INITIAL POTENTIAL ENERGY[hartree] =
-0.220770726164E+04
INITIAL KINETIC ENERGY[hartree] =
0.403768735935E+00
INITIAL TEMPERATURE[K] =
284.281
INITIAL BAROSTAT TEMP[K] =
0.482402310612E+02
INITIAL PRESSURE[bar] =
-0.416980916246E+04
INITIAL VOLUME[bohr^3] =
0.223680134131E+05
INITIAL CELL LNTHS[bohr] = 0.2817577E+02 0.2817577E+02
0.2817577E+02
INITIAL CELL ANGLS[deg] = 0.9000000E+02 0.9000000E+02
0.9000000E+02
******************************** GO CP2K GO!
**********************************
*******************************************************************************
* ___
*
* / \
*
* [ABORT]
*
* \___/ Error in diagonalisation
*
* |
*
* O/|
*
* /| |
*
* / \
common/eigenvalueproblems.F:88 *
*******************************************************************************
which is a bit odd considering that I use the OT algorithm.
I also tried the restart by reducing the time step from 0.5 to 0.1 fs but I
always get the same error.
If I leave the keyword NPT_I in my input everything goes fine.
Any ideas...?
Best Regards
Luca
===== Routine Calling Stack =====
3 velocity_verlet
2 qs_mol_dyn_low
1 CP2K
Il giorno lunedì 16 ottobre 2017 09:49:41 UTC+2, Marcella Iannuzzi ha
scritto:
>
>
>
> Hi Luca,
>
> you have set RESTART DEFAULTS as False, hence it is probably not
> restarting the CELL.
> I may want to restart it as well.
>
> Kind regards,
> Marcella
>
>
> On Sunday, October 15, 2017 at 7:58:17 PM UTC+2, Luca wrote:
>>
>> Dear all
>> I tried to restart an NPT simulation by putting in my input file the
>> following section:
>>
>> &EXT_RESTART ON
>> RESTART_DEFAULT F
>> RESTART_FILE_NAME myjob-1.restart
>> RESTART_POS T
>> RESTART_COUNTERS T
>> RESTART_VEL T
>> RESTART_THERMOSTAT T
>> RESTART_BAROSTAT T
>> RESTART_BAROSTAT_THERMOSTAT T
>> &END EXT_RESTART
>>
>> Notwithstanding the restart section, I get strong oscillation in the
>> average pressure at the beginning of the restarted simulation (please see
>> the attached).
>> On the contrary, the temperature and the potential energy do not show (as
>> expected) jumps. Could someone point out whether I am missing something in
>> the restart section?
>> The simulation is an NPT_I simulation. I have also found the calculation
>> crashes at the first iteration if I try a restart by changing NPT_I with
>> NPT_F. Is this normal?
>> Do I have to add something else in the restart section?
>>
>> Luca
>>
>
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