Problems exists in printing cube file in a QMMM simulation
Tianshu Jiang in Beijing
jts2t... at gmail.com
Thu Dec 7 13:34:27 UTC 2017
&DFT
CHARGE 0
&QS
METHOD PM6
&SE
&COULOMB
CUTOFF [angstrom] 12.0
&END
&EXCHANGE
CUTOFF [angstrom] 12.0
&END
&END
&END QS
&SCF
MAX_SCF 30
EPS_SCF 1.0E-6
SCF_GUESS ATOMIC
&OT
MINIMIZER DIIS
PRECONDITIONER FULL_SINGLE_INVERSE
&END
&OUTER_SCF
EPS_SCF 1.0E-6
MAX_SCF 10
&END
&PRINT
&RESTART OFF
&END
&RESTART_HISTORY OFF
&END
&END
&END SCF
#&EXTERNAL_POTENTIAL
# FUNCTION 0.0000001*(X^4+Y^2+Z^2)
#&END
&PRINT
&MO_CUBES
NHOMO 1
NLUMO 1
WRITE_CUBE .TRUE.
&EACH
MD 500
&END
&END MO_CUBES
&END PRINT
&END DFT
The above is the setting in the force_eval_qm.inc. After checked it
carefully, I find out that my method is PM6 (semi-empirical).
Then I changed the simulation to DFT calculation(I delete the &SE
subsection). But the error tells
No &KIND section was possible to associate to the atomic kind <O>. *
The KIND section were also scanned for the corresponding element *
and for the DEFAULT section but no match was found. Check your *
input file!
First I should change the whole simulation to DFT level. I deleted the &SE
subsection. Then I added &XC subsection and
some basis set and potential file into it.
The couple style I choose is Gauss, but there appears the error "Radius
Value not found in MM_POTENTIAL file-- qmmm_gaussian_input.F:214".
What should I add into the MM_POTENTIAL file?
Appreciate for your reply !
在 2017年12月7日星期四 UTC+8下午4:46:25,Matt W写道:
>
> Hi again,
>
> sorry, I wanted to check that you are running DFT? You cannot print cubes
> for DFTB or semiempirical methods or some other Hamiltonians.
>
> If you are running DFT, then you should get the cube files.
>
> Matt
>
> On Thursday, December 7, 2017 at 2:23:00 AM UTC, Tianshu Jiang in Beijing
> wrote:
>>
>> Hi, Matt.
>>
>> The &DFT subsection located under the &FORCE_EVAL subsection. But not
>> under the &QMMM subsection or &QM subsection.
>>
>> &FORCE_EVAL
>> METHOD QMMM
>> @INCLUDE ${ROOT}/Files/force_eval_mm.inc
>> @INCLUDE ${ROOT}/Files/force_eval_qm.inc
>> &QMMM
>> &CELL
>>
>> The DFT settings is included in force_eval_qm.inc.
>> The total steps of MD I set is 2000 steps
>>
>> &MOTION
>> &MD
>> ENSEMBLE NVT
>> STEPS 2000
>>
>> But there is no any file with a cube postfix in the current directory.
>> So where could be the problem?
>>
>>
>>
>> 在 2017年12月7日星期四 UTC+8上午12:52:57,Matt W写道:
>>>
>>> Are you running DFT as the QM part?
>>> Have you run for 1000 steps?
>>>
>>> Matt
>>>
>>> On Wednesday, December 6, 2017 at 12:12:18 PM UTC, Tianshu Jiang in
>>> Beijing wrote:
>>>>
>>>> Hi everyone,
>>>>
>>>> I want to print the cube file according to the following settings in a
>>>> QMMM simulation.
>>>> &PRINT
>>>> &MO_CUBES
>>>> NHOMO 1
>>>> NLUMO 1
>>>> WRITE_CUBE .TRUE.
>>>> &EACH
>>>> MD 1000
>>>> &END
>>>> &END MO_CUBES
>>>> &END PRINT
>>>> &END DFT
>>>>
>>>> Because it is QMMM simulation, the &FORCE_EVAL subsection consists of
>>>> two parts: QM part and MM part.
>>>> I print the *cube file in the &DFT settings.
>>>> But there is no such *.cube file in the current directory.
>>>> So, where is the problem ?
>>>>
>>>> Thanks for your reply !
>>>>
>>>
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