pdos and wavefunction cube files are not consistent?

[Alex Vozny]

I'm having the above issue in one of my calculations:
I have two nearly non-interacting molecules
When I look at the HOMO of the whole system, the PDOS shows that it is 
fully (say 99%) localized on one molecule
when I look at the HOMO cube file, it is almost 50/50 delocalized on both.

Initially I though I was doing something wrong but now I've heard it 
reconfirmed by other people.
How do I proceed to bring this to developers' attention and investigation 
of the origin of the problem?

Alex
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