Cell dimensions
samala nagaprasad reddy
snpre... at gmail.com
Fri Sep 2 20:26:31 UTC 2016
Hi all,
I am trying to optimize (cell and geometry) water box (taken from cp2k
benchmarks) with 128 water molecules using DFTB method. I am taking
initially 20 20 20 as cell dimensions and asking to minimize cell and
geometry simultaneously. I think it is well known that the dimensions
should be around 15 ang (In the benchmark study given as 15.6404 15.6404
15.6404). I am getting the dimensions 12.539 12.539 12.539 from my
calculations. The input and end of output given here. Why DFTB is far away
from the benchmark study? Am I missing something in my input? I really
thankful to them, if someone help in this regard.
I look forward to hear the solutions
Thanks in advance
Nagaprasad
Input:
&FORCE_EVAL
METHOD Quickstep
STRESS_TENSOR ANALYTICAL
&DFT
&POISSON
PERIODIC XYZ
&EWALD
EWALD_TYPE SPME
GMAX 25
O_SPLINE 5
&END EWALD
&END POISSON
&LOCALIZE ON
&PRINT
&TOTAL_DIPOLE
COMMON_ITERATION_LEVELS 40000
FILENAME ./TOTAL_DIPOLE.dat
ADD_LAST NUMERIC
PERIODIC TRUE
REFERENCE COAC
&EACH
MD 1
&END EACH
&END TOTAL_DIPOLE
&END PRINT
&END LOCALIZE
&QS
METHOD DFTB
&DFTB
DIAGONAL_DFTB3 T
SELF_CONSISTENT T
HB_SR_GAMMA T
DO_EWALD T
DISPERSION T
&PARAMETER
PARAM_FILE_PATH /opt/cp2k_libint/cp2k/data/DFTB/scc
PARAM_FILE_NAME scc_parameter
DISPERSION_TYPE D3
DISPERSION_RADIUS 15.
COORDINATION_CUTOFF 1.e-4
D3_SCALING 1.0 1.5 1.5
DISPERSION_PARAMETER_FILE /opt/cp2k_libint/cp2k/data/dftd3.dat
&END PARAMETER
&END DFTB
&END QS
&SCF
SCF_GUESS ATOMIC #RESTART #ATOMIC
EPS_SCF 1.0E-7
MAX_SCF 2000
&OT
PRECONDITIONER FULL_ALL
MINIMIZER DIIS
&END
&OUTER_SCF
OPTIMIZER DIIS
MAX_SCF 100
EPS_SCF 1.0E-7
&END OUTER_SCF
&END SCF
&PRINT
&MOMENTS
PERIODIC TRUE
&EACH
MD 1
&END
MAX_MOMENT 1
FILENAME =dipolemet.traj
&END MOMENTS
&MULLIKEN
&END MULLIKEN
&END PRINT
&END DFT
&SUBSYS
&CELL
ABC [angstrom] 20.0000 20.0000 20.0000
SYMMETRY CUBIC
PERIODIC XYZ
&END
&TOPOLOGY
COORD_FILE_NAME ./h2o.xyz
COORDINATE xyz
&END
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PRINT_LEVEL MEDIUM
PROJECT wat
RUN_TYPE CELL_OPT
EXTENDED_FFT_LENGTHS
&END GLOBAL
&MOTION
&CELL_OPT
EXTERNAL_PRESSURE 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 1.0
TYPE DIRECT_CELL_OPT
MINIMIZER LBFGS
KEEP_SYMMETRY
MAX_ITER 5000
&PRINT
&CELL ON
&EACH
CELL_OPT 1
&END EACH
&END CELL
&END PRINT
&END CELL_OPT
&PRINT
&RESTART
LOG_PRINT_KEY T
&EACH
MD 20
&END EACH
ADD_LAST NUMERIC
&END RESTART
&TRAJECTORY
LOG_PRINT_KEY T
FORMAT XYZ
UNIT angstrom
&EACH
MD 1
&END EACH
ADD_LAST NUMERIC
&END TRAJECTORY
&VELOCITIES
LOG_PRINT_KEY T
FORMAT XYZ
UNIT angstrom
&EACH
MD 1
&END EACH
ADD_LAST NUMERIC
&END VELOCITIES
&END PRINT
&END MOTION
few steps in Output:
-------- Informations at step = 1092 ------------
Optimization Method = LBFGS
Total Energy = -526.7648934300
Internal Pressure [bar] = 20.7598453579
Real energy change = -0.0000068927
Decrease in energy = YES
Used time = 2.757
Convergence check :
Max. step size = 0.0024311351
Conv. limit for step size = 0.0030000000
Convergence in step size = YES
RMS step size = 0.0005225723
Conv. limit for RMS step = 0.0015000000
Convergence in RMS step = YES
Max. gradient = 0.0003651668
Conv. limit for gradients = 0.0004500000
Conv. in gradients = YES
RMS gradient = 0.0000715192
Conv. limit for RMS grad. = 0.0003000000
Conv. in RMS gradients = YES
Pressure Deviation [bar] = 19.7598453579
Pressure Tolerance [bar] = 100.0000000000
Conv. for PRESSURE = YES
---------------------------------------------------
*******************************************************************************
*** GEOMETRY OPTIMIZATION
COMPLETED ***
*******************************************************************************
17:54:28 NOTE in cp_output_handling:cp_print_key_unit_nr :: Moving file
wat-1.restart.bak-2 into file wat-1.restart.bak-3.
17:54:28 NOTE in cp_output_handling:cp_print_key_unit_nr :: Moving file
wat-1.restart.bak-1 into file wat-1.restart.bak-2.
17:54:28 NOTE in cp_output_handling:cp_print_key_unit_nr :: Moving file
wat-1.restart into file wat-1.restart.bak-1.
17:54:28 NOTE in cp_output_handling:cp_print_key_unit_nr :: Writing RESTART
1_1092 to wat-1.restart
Reevaluating energy at the minimum
CELL| Volume [angstrom^3]:
1971.378
CELL| Vector a [angstrom]: 12.539 0.000 0.000 |a| =
12.539
CELL| Vector b [angstrom]: 0.000 12.539 0.000 |b| =
12.539
CELL| Vector c [angstrom]: 0.000 0.000 12.539 |c| =
12.539
CELL| Angle (b,c), alpha [degree]:
90.000
CELL| Angle (a,c), beta [degree]:
90.000
CELL| Angle (a,b), gamma [degree]:
90.000
CELL| Requested initial symmetry:
CUBIC
CELL| Numerically
orthorhombic: YES
DISTRIBUTION OF THE NEIGHBOR LISTS
Total number of particle pairs:
31467
Total number of matrix elements:
31467
Average number of particle pairs:
1259
Maximum number of particle pairs:
1354
Average number of matrix element:
1259
Maximum number of matrix elements:
1354
Number of electrons:
1024
Number of occupied
orbitals: 512
Number of molecular
orbitals: 512
Number of orbital
functions: 768
Number of independent orbital
functions: 768
Parameters for the always stable predictor-corrector (ASPC) method:
ASPC order: 3
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