[CP2K:8300] Problem in Compiling CUDA Version of CP2K 4.1
Chi-Duen Poon
cdp... at gmail.com
Wed Oct 26 17:03:53 UTC 2016
I download SVN revision 17503 today. The compilation has gone pass cusmm.
However, I run into another error. Here is the error message.
/home/cdpoon/Downloads/cp2k/cp2k/src/pw/cuda/fft_cuda_z.cu(73): error:
identifier "CUFFT_COMPATIBILITY_NATIVE" is undefined
/home/cdpoon/Downloads/cp2k/cp2k/src/pw/cuda/fft_cuda_z.cu(142): error:
identifier "CUFFT_COMPATIBILITY_NATIVE" is undefined
/home/cdpoon/Downloads/cp2k/cp2k/src/pw/cuda/fft_cuda_z.cu(210): error:
identifier "CUFFT_COMPATIBILITY_NATIVE" is undefined
3 errors detected in the compilation of
"/tmp/tmpxft_00006c08_00000000-7_fft_cuda_z.cpp1.ii".
make[3]: *** [fft_cuda_z.o] Error 2
make[2]: *** [all] Error 2
make[1]: *** [ssmp] Error 2
make: *** [all] Error 2
What should I do to fix this problem?
On Tuesday, October 25, 2016 at 6:38:21 PM UTC-4, Ole Schütt wrote:
>
> Dear Chi-Duen,
>
> the problem with Cuda 8.0 has been fixed in SVN revision 17473.
> Unfortunately, the issue only came to our attention shortly after the
> CP2K 4.1 release.
>
> -Ole
>
>
> On 2016-10-25 21:27, Chi-Duen Poon wrote:
> > I have no problem compiling sopt and ssmp of CP2K 4.1 in CentOS 7.2.
> > However, I am getting the following error to add CUDA support.
> > CUDA is at version 8.0.
> >
> > <command-line>:0:0: warning: "__GNUC_MINOR__" redefined [enabled by
> > default]
> > <built-in>:0:0: note: this is the location of the previous definition
> > 1 error detected in the compilation of
> > "/tmp/tmpxft_000031e7_00000000-5_libcusmm_part03.cpp4.ii".
> > make[3]: *** [libcusmm_part03.o] Error 2
> >
> /nas02/data/thl/packages/el7/BUILD/x86_64/cp2k-4.1/src/dbcsr/libsmm_acc/libcusmm/./kernels/cusmm_common.h(15):
>
> > error: function "atomicAdd(double *, double)" has already been defined
> >
> >
> /nas02/data/thl/packages/el7/BUILD/x86_64/cp2k-4.1/src/dbcsr/libsmm_acc/libcusmm/./kernels/cusmm_common.h(15):
>
> > error: function "atomicAdd(double *, double)" has already been defined
> >
> >
> /nas02/data/thl/packages/el7/BUILD/x86_64/cp2k-4.1/src/dbcsr/libsmm_acc/libcusmm/./kernels/cusmm_common.h(15):
>
> > error: function "atomicAdd(double *, double)" has already been defined
> >
> > 1 error detected in the compilation of
> > "/tmp/tmpxft_0000321b_00000000-5_libcusmm_part05.cpp4.ii".
> > make[3]: *** [libcusmm_part05.o] Error 2
> > 1 error detected in the compilation of
> > "/tmp/tmpxft_000031fc_00000000-5_libcusmm_part04.cpp4.ii".
> > make[3]: *** [libcusmm_part04.o] Error 2
> > 1 error detected in the compilation of
> > "/tmp/tmpxft_00003223_00000000-5_libcusmm_part06.cpp4.ii".
> > make[3]: *** [libcusmm_part06.o] Error 2
> > make[2]: *** [all] Error 2
> > make[1]: *** [ssmp] Error 2
> > make: *** [all] Error 2
> >
> > The arch file has the following listing.
> >
> > CC = gcc
> > CXX = g++
> > CPP =
> > AR = ar -r
> > FC = gfortran
> > LD = gfortran
> > #
> > DFLAGS = -D__ACC -D__DBCSR_ACC -D__PW_CUDA -D__LIBXSMM
> > -D__FFTW3 -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5
> > -D__LIBXC
> > #
> > WFLAGS = -Werror=aliasing -Werror=ampersand
> > -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std
> > -Werror=line-truncation -Werror=tabs -Werror=realloc-lhs-all
> > -Werror=target-lifetime -Werror=underflow
> > -Werror=unused-but-set-variable -Werror=unused-variable
> > -Werror=unused-dummy-argument -Werror=conversion -Werror=uninitialized
> > -Wno-maybe-uninitialized
> > #
> > FCDEBFLAGS = -ffree-form -std=f2003 -fimplicit-none
> > CFLAGS = -march=native -fno-omit-frame-pointer -g -O3
> > -funroll-loops -ffast-math $(PROFOPT) -fopenmp $(DFLAGS)
> > FCFLAGS = -march=native -fno-omit-frame-pointer -g -O3
> > -funroll-loops -ffast-math $(PROFOPT) -fopenmp $(FCDEBFLAGS) $(WFLAGS)
> > $(DFLAGS) -I'/usr/lib64/gfortran/modules'
> > #
> > LDFLAGS = $(FCFLAGS) -Wl,--enable-new-dtags
> > CUDAPATH = /usr/local/cuda/lib64/
> > LIBS = -lxsmmf -lxsmm -lxcf90 -lxc -lderiv -lint -lfftw3
> > -lfftw3_omp -lopenblaso -lstdc++ $(CUDAPATH)/libcudart.so
> > $(CUDAPATH)/libcufft.so $(CUDAPATH)/libcublas.so -lrt
> > #
> > NVCC = /usr/local/cuda/bin/nvcc -D__GNUC__=4
> > -D__GNUC_MINOR__=9 -Xcompiler=--std=gnu++98
> > NVFLAGS = -arch sm_35 $(DFLAGS)
> >
> > Has anyone seen this before? If you have, how would you fix the
> > problem? It looks like it has something to do with libcusmm.
> >
> > CD.
> >
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