Have to use an unreasonably big QM box in a QM/MM calculation
ghislain.m... at gmail.com
ghislain.m... at gmail.com
Thu Jan 7 19:41:08 UTC 2016
Hi all,
I'm running a QM/MM calculation of ions in water and don't understand the
following.
When I have a 20 by 20 by 20 A QM box sitting in a 40 by 40 by 40 all is
fine and I can run it as long as I want. However, my QM region is small
enough to fit in a 10 by 10 by 10 QM box (which would cut the cost A LOT).
I checked the coordinates and everything and it does fit in the box. Now my
simulation will crash with a seg fault as follows:
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
#0 0x416933D in _gfortrani_backtrace
#1 0x4144940 in _gfortrani_backtrace_handler
#2 0x7F1EDE27FD3F
#3 0x7F1EDF0130DA
#4 0x7F1ED8A6F2EA
#5 0x7F1ED8AF37E8
#6 0x7F1ED8AF228C
#7 0x7F1EDF0258DB
#8 0x7F1EE029C714
#9 0x7F1EE02A0ECC
#10 0x7F1EE0FF3B18
#11 0x10EEAA8 in
__qs_integrate_potential_product_MOD_integrate_v_rspace._omp_fn.0 at
qs_integrate_potential_product.F:?
#12 0x7F1EDEA4B349
#13 0x7F1EDE617181
#14 0x7F1EDE34400C
#15 0xFFFFFFFFFFFFFFFF
srun: error: n06: task 0: Segmentation fault
I really don't understand what can be the problem. Any suggestions?
Thanks in advance
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