OH bond of water elongates after restarting ab initio MD from a classical MD run
Aman Jindal
amanjin... at gmail.com
Tue Dec 6 16:34:13 UTC 2016
Hello everyone,
I took the NaCl/water system. I have fixed the NaCl atoms as I am
interested in only water dynamics.After few ps of classical MD using FIST
methods in CP2K, I switched to* ab inito *MD using the restart file from
the previous run. I saw the trajectory from both the run in VMD, upto
classical MD everything seems fine, but when I started AIMD the some of the
O-H bonds in water is highly elongated. I am not able to understand why it
is happening so ? Motion section of my input file is as follows:
&MOTION
&CONSTRAINT
&FIXED_ATOMS
COMPONENTS_TO_FIX XYZ
LIST 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50
51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75
76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138
139 140 141 142 143 144
&END FIXED_ATOMS
&END CONSTRAINT
&GEO_OPT
OPTIMIZER BFGS
MAX_ITER 100
MAX_DR [bohr] 0.003
&BFGS
&END
&END
&MD
ENSEMBLE NVE
TEMPERATURE [K] 330
TIMESTEP [fs] 0.5
STEPS 500
&END
&PRINT
&TRAJECTORY
&EACH
MD 20
&END EACH
&END TRAJECTORY
&VELOCITIES OFF
&END VELOCITIES
&FORCES OFF
&END FORCES
&RESTART_HISTORY
&EACH
MD 100
&END EACH
&END RESTART_HISTORY
&RESTART
BACKUP_COPIES 3
&EACH
MD 1
&END EACH
&END RESTART
&END PRINT
&END
&EXT_RESTART
RESTART_FILE_NAME NaCl-Free-1.restart
I have attached the input file also for the reference. One more problem is
that this run is taking quite a long time, is there any I can improve the
speed of the run ?
Thanks in advance,
Aman Jindal
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